Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021776
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    30   0.28 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   2.0  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    27   2.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   6.0  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   7.9  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 561 PKDIPSQVPPLTPGTNKKMAEALKATFASWEKEQLRLGVPKDPRQWS 701
           P+  P   PP+  G N    EA + T  +   E  R G P DP   S
Sbjct: 437 PRFAPRGSPPVRGGKNVLSPEAKEHTHKNISPESSRFGTPSDPNSSS 483


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 179  SRTFPASLTQKHRSMKSLVSKHSVNTERSRR 87
            +RTFP SLT  H  +  ++SKH   ++  RR
Sbjct: 1353 ARTFPESLTTYHLDLLLVLSKHPFLSKSWRR 1383


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 169 NVREVAHDELTMPQIALNGCCYYKKINVLDKRCMIRLRR 285
           N+  V HD  TMP I + G      +NV++++ +++  R
Sbjct: 228 NILVVNHDASTMPNIYVKGSSPSDGLNVIEEKKILKFDR 266


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +3

Query: 477 GL*PAAKHSGGSAIAGMGIKVMMKAFNKPKDI-----PSQV-PPLTPGTNKKMAEALKAT 638
           G+ PA+K S  S     G ++  K    P +      PS V PP  PG N K+A+ +   
Sbjct: 248 GIEPASKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSLVNPPTDPGLNSKIAQLVSMG 307

Query: 639 FASWEKEQ 662
           F   E  Q
Sbjct: 308 FDPLEAAQ 315


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 40  RNPCASRLQ*PVRNTNLRDRSVFTECL 120
           +NP +S    P+ + NLRD S F  CL
Sbjct: 367 QNPSSSSNSIPLISRNLRDFSFFKRCL 393


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 533 DSHACDSRSSTMFCRWLKSCSHPATISSIL 444
           D+++       +F ++L+ C HPAT S++L
Sbjct: 355 DTYSTHQVFKKVFPQFLEVCPHPATFSAML 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,912
Number of Sequences: 5004
Number of extensions: 51168
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)