Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021776
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0620 - 8151065-8151791,8152246-8152418                           31   0.67 
08_02_1139 - 24638824-24639325,24639528-24639713,24639801-246405...    29   3.6  
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613...    28   8.3  

>04_01_0620 - 8151065-8151791,8152246-8152418
          Length = 299

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -3

Query: 578 RWDVFWLIESFHHDFDSHACDSRSSTMFCRWLKSCSHPAT 459
           +WD +W+   F+H     A    +  + CR    C  P T
Sbjct: 3   KWDGYWMARWFYHTIPFEAGSDSAKALLCRRQGDCIEPET 42


>08_02_1139 -
           24638824-24639325,24639528-24639713,24639801-24640543,
           24640709-24640870,24641141-24641500
          Length = 650

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 589 GGTCDGMSFGLLKAFIMTLIPMPAIADPPL 500
           G    G SFG+L   I T  P PAIA P +
Sbjct: 578 GAAAAGFSFGMLPRSIATPAPSPAIAVPAM 607


>09_04_0597 -
           18859601-18859818,18860914-18861083,18861250-18861303,
           18862759-18863284,18864465-18864663,18866787-18866852,
           18866999-18867300,18867394-18867634,18867716-18867973,
           18868076-18868207
          Length = 721

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 504 GGSAIAGMGIKVMMKAFNKPKDIPSQVPPLTPG 602
           GG+A A  G  V  +A  K + + ++VPP+ PG
Sbjct: 23  GGAAAAASGFPVSSRA-TKIRRLDAEVPPVVPG 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,022,189
Number of Sequences: 37544
Number of extensions: 347533
Number of successful extensions: 995
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)