Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021776
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       29   2.4  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U64859-3|AAC69093.2|  447|Caenorhabditis elegans Innexin protein...    28   7.4  
Z68014-8|CAI79183.1|  121|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC024211-4|AAP82631.1|  487|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical
           protein C25G4.5 protein.
          Length = 1263

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 281 DEHFKSDVI*DISKMKNSEECLD*SMDVVPKLCDIY*SYLKN*VSLKETVNTYKIIS 451
           D  F SDV   +S +KN+   L  S+D  P++ D   +YL   V  +  +  YKI+S
Sbjct: 312 DRFFTSDV--SVSLVKNTRALLTNSLDKKPRILD---NYLMLEVKDRPVIGRYKIMS 363


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 281 DEHFKSDVI*DISKMKNSEECLD*SMDVVPKLCDIY*SYLKN*VSLKETVNTYKIIS 451
           D  F SDV   +S +KN+   L  S+D  P++ D   +YL   V  +  +  YKI+S
Sbjct: 312 DRFFTSDV--SVSLVKNTRALLTNSLDKKPRILD---NYLMLEVKDRPVIGRYKIMS 363


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 569 VFWLIESFHHDFDSHACDSRSSTMFCRWLKSCSHPATISSILFC 438
           V W ++ FHH F S+    R+     R+ K+     T + ++ C
Sbjct: 138 VTWDMQQFHHLFSSNRTPQRTRDTMDRYFKTKEEGDTPTHVIIC 181


>U64859-3|AAC69093.2|  447|Caenorhabditis elegans Innexin protein 5
           protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = -3

Query: 212 IWGIVSSSCATSRTFPASLTQKHRSMKSLVSKHSVNTERSRRFVFRTGHCKREAQGFRSV 33
           IW   + SC       A++++  R +KS +S   V   +  R+ F+  + + E+  F+  
Sbjct: 127 IWRTFNESCELKIKELAAVSEASRKIKSNMSDDQVKATKFGRYFFKKLNFRNESPVFKET 186

Query: 32  KQAV 21
              V
Sbjct: 187 GSVV 190


>Z68014-8|CAI79183.1|  121|Caenorhabditis elegans Hypothetical
           protein W04G3.11 protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 281 DEHFKSDVI*DISKMKNSEECLD*SMDVVPKLCDIY*SYLKN*VSLKETVN 433
           +E+ + +V   I+ MKN+E+ +  +MD    L   Y   L N   LKE  N
Sbjct: 6   EEYMEKEVDYAIANMKNAEQGIKETMDAFIALVTGYNIDLSNFAELKENYN 56


>AC024211-4|AAP82631.1|  487|Caenorhabditis elegans Hypothetical
           protein Y76B12C.6 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 507 GSAIAGMGIKVMMKAFNKPKDIPSQVPPLTPG 602
           G A  G+G   ++   ++ +D+   VPPL PG
Sbjct: 412 GGARDGLGSLGLLSELDRARDVLDAVPPLPPG 443


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 384 ISHSFGTTSIDQSKHSSLFFILLMSYITSL 295
           I + FGT  I  SK   L+F+  ++YI +L
Sbjct: 382 IKYIFGTLKIQYSKSDGLYFLTDLNYIGNL 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,185,932
Number of Sequences: 27780
Number of extensions: 301845
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)