Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021776
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.40 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.70 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 570 IPSQVPPLTPGTNKKMAEALKATFA 644
           IPS  P  TPG + K  E   A FA
Sbjct: 884 IPSYKPASTPGCSSKNGEPTSAAFA 908


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 513 PILHYVLPLVKVLFTSSDYLVD-IILYVFTVSFKL 412
           P LHY+L L+ +LFT    L + +++++F  +  L
Sbjct: 45  PSLHYLLALLYILFTFLALLGNGLVIWIFCAAKSL 79


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 581 LRWDVFWLIESFHHDFDSHACDSRSSTMFC 492
           L W +F+L+ S   D     C +  +T +C
Sbjct: 119 LAWALFYLLVSLRIDLPWRTCGNPWNTRYC 148


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 581 LRWDVFWLIESFHHDFDSHACDSRSSTMFC 492
           L W +F+L+ S   D     C +  +T +C
Sbjct: 172 LAWALFYLLVSLRIDLPWRTCGNPWNTRYC 201


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = -3

Query: 224  PFNAI-WGIVSSSCATSRTFPASLTQKHRSMKSLVSKHSVNTERSRRFVFRT 72
            P N   W +VS+S    R F  +  Q     +  V  H+V       F F T
Sbjct: 1538 PINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNVAGSNQAEFTFVT 1589


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = -3

Query: 224  PFNAI-WGIVSSSCATSRTFPASLTQKHRSMKSLVSKHSVNTERSRRFVFRT 72
            P N   W +VS+S    R F  +  Q     +  V  H+V       F F T
Sbjct: 1534 PINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNVAGSNQAEFTFVT 1585


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/31 (22%), Positives = 14/31 (45%)
 Frame = -3

Query: 227 HPFNAIWGIVSSSCATSRTFPASLTQKHRSM 135
           H  + IWGI++        +P + T   + +
Sbjct: 344 HGASGIWGIIAIGLFADNPYPLNTTNGRKGL 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,894
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)