Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021776
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    29   2.3  
At3g49410.1 68416.m05401 transcription factor-related contains w...    29   3.0  
At2g39680.1 68415.m04868 expressed protein                             27   9.1  

>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/60 (21%), Positives = 23/60 (38%)
 Frame = -3

Query: 491 RWLKSCSHPATISSILFCMYLQXXXXXXXXXNKINKYHTVSAQRPLISLNTPRCFSFCLC 312
           +W  +C+HP  + S   CM             +  K+H +  +R  + +N    F    C
Sbjct: 394 KWCSACTHPICLQSFYGCMDCDFILHQNCAGFRRMKWHVLHNERLTLVINEAEPFRCYAC 453


>At3g49410.1 68416.m05401 transcription factor-related contains weak
           similarity to transcription factor IIIC63 (GI:5281316)
           [Homo sapiens]
          Length = 559

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 450 RRDSRWM*TGL*PAAKHSGGSAIAGMGIKVMMKAFNKPKDIPSQV---PPLTPGTNKK 614
           ++  +WM   + P    S    +A   + +++  F  PKDIP  V   PP T G  KK
Sbjct: 144 QKKRKWM--DVDPLTGKSDLMGLADEDVMMLLPQFFAPKDIPDNVALKPPATSGPKKK 199


>At2g39680.1 68415.m04868 expressed protein 
          Length = 84

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -1

Query: 466 QRLSRRYYFVCIYSFF*TNL---IF*IRSINITQFRHNVH*SV*TLLAVFHFAYVLYHV 299
           QRLSR     CIYS     L   +  IRS  +T F   +      +   +H  Y+ YH+
Sbjct: 9   QRLSRSILLFCIYSNTYMGLKTYVSTIRSTRVTTFFTGIRLKHICISHFYHLEYLNYHL 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,732
Number of Sequences: 28952
Number of extensions: 273916
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)