Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021775
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   3.8  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 436 SYSGSPVHHSICPVLL 389
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 436 SYSGSPVHHSICPVLL 389
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 436 SYSGSPVHHSICPVLL 389
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 436 SYSGSPVHHSICPVLL 389
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 240  CGS*REPALKAIVTRVTGEPLSKAATN 160
            CG  + P LK +   + G P   + TN
Sbjct: 2672 CGCGKHPLLKTLNNELRGTPSDISVTN 2698


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 309 PYSTQTLSDWSIC*CFWRQRINLLYFGSNTG 401
           P     LS+++ C C W Q + LL  G+  G
Sbjct: 565 PTGGDALSEFNFCGCGWPQHM-LLPKGTEAG 594


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 509 KIISYFRRGALSLSSHGLNSWFETKLFRISSASFNLSCV 393
           K+I  F      LS   + +    K FR++ A FNL  V
Sbjct: 87  KVIKSFFNQGYELSKQEIFNCCSKKSFRMNFAIFNLYMV 125


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 219 LALVMNHKPNWDVACTTISCWTN 287
           LA+ +NH PN+       + W N
Sbjct: 660 LAMWLNHNPNYAEVTDWYTGWKN 682



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +3

Query: 6   ILPKVSKNLRKWHPKLSSPPLFVML 80
           I+P++   +  W+P   + P+ V +
Sbjct: 521 IMPRIQAEVNIWNPLTDTIPIHVWI 545


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,726
Number of Sequences: 336
Number of extensions: 3160
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)