Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021775
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    35   0.011
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    29   0.57 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   1.7  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    27   3.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   3.0  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       26   5.3  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   5.3  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.3  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   9.2  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +1

Query: 235 TTSRIGMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLND 414
           T    G +H L   A   TKN S   ++ +    GA+++A   RE   Y   A ++ + +
Sbjct: 58  TAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPN 117

Query: 415 ALEILNNLVSN 447
           A+ +L ++++N
Sbjct: 118 AVAVLADILTN 128


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 361 DRELIYYTLEATQDKLNDALEILNNLVSNQEFRP 462
           +REL YY L+   +KL++ +  LN  + ++   P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 205 NRLQSWLSL*TTSRIGMSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDRELIYY 381
           N   + +SL   + +  S  L S +G  T+ N+S+   QR  ++   + S + D   +YY
Sbjct: 65  NSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYY 124

Query: 382 TLEATQD 402
               T D
Sbjct: 125 DTTGTDD 131


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 252 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 100
           PN ACG+ R+   + + T ++   +  +A N      LDW + S +   A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 546  KAAYRRGLGNSLFISPKRINDISSESLQ 629
            K ++RRGL N +  S KR+ D   E ++
Sbjct: 1110 KESFRRGLNNRVKFSNKRVRDDYDEEME 1137


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 313 IQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDA 417
           +QR+L Q    V+  GD  L   T+E  Q   +DA
Sbjct: 102 VQRELEQQRVVVNIGGDHSLAIGTVEGVQAVYDDA 136


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 397  QDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIIFYHP 519
            +D+ N  L  +N  V+N+      +ND+  +L  D +FY P
Sbjct: 1236 EDEFNKTLSTINLEVANKLTSSEYINDSEMQLIDDPVFYPP 1276


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 497 YFRRGALSLSSHGLNSWFETKLFRISSASFNLSCVASKV**INSLSPEAL 348
           YF     S++ H   + F T +  +++ SFN++ + S    ++  SP  L
Sbjct: 182 YFNTSVTSVAVHNSTTVFPTSVPIVNTTSFNVTTIPSSA--VHYASPSGL 229


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 528 AVDLLHKAAYRRGLGNSLFISPKRINDIS 614
           A+  LH+ A+ RG+GN +++       IS
Sbjct: 156 AMAKLHEKAFHRGIGNEVYLPASASPSIS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,311
Number of Sequences: 5004
Number of extensions: 55558
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)