Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021775
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 55 4e-08
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 54 7e-08
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 54 1e-07
12_02_0312 + 17395716-17398112 29 3.1
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 29 4.1
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 5.4
06_03_1073 - 27373259-27373304,27373542-27373624,27373719-273743... 27 9.5
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/90 (33%), Positives = 49/90 (54%)
Frame = +1
Query: 235 TTSRIGMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLND 414
T + G SH+L A +T N S + R++ IG VSAS RE + YT +A + + +
Sbjct: 105 TPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASREQMCYTYDAFKAYVPE 164
Query: 415 ALEILNNLVSNQEFRPWELNDNAPRLKYDI 504
+E+L + V N F WE+ + ++K +I
Sbjct: 165 MVEVLIDSVRNPAFFNWEIKEQLEKIKAEI 194
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/90 (33%), Positives = 48/90 (53%)
Frame = +1
Query: 235 TTSRIGMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLND 414
T+S G SH+L A +T N S + R++ IG V AS RE + YT +A + +
Sbjct: 157 TSSSSGTSHLLERMAFKSTTNRSHLRLVREVEAIGGNVFASASREQMSYTYDALKCYAPE 216
Query: 415 ALEILNNLVSNQEFRPWELNDNAPRLKYDI 504
+E+L + V N F WE+ + ++K +I
Sbjct: 217 MVEVLIDSVRNPAFLEWEVKEQLQKIKSEI 246
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/86 (29%), Positives = 48/86 (55%)
Frame = +1
Query: 247 IGMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEI 426
+G + +L+ A TT N S + R++ +G V AS +RE++ Y+ A + + + +E+
Sbjct: 116 LGATQLLKKMAYTTTTNRSHLRVVREIEAVGGNVKASANREMMSYSYAALKTYMPEMVEV 175
Query: 427 LNNLVSNQEFRPWELNDNAPRLKYDI 504
L + V N F WE+ + +LK ++
Sbjct: 176 LIDCVRNPAFLDWEVKEQIMKLKAEL 201
>12_02_0312 + 17395716-17398112
Length = 798
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +1
Query: 262 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEILNNLV 441
+++S +G + K ++ +Q+KL ++ SGD+ + + + D +ND E++N L
Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291
Query: 442 SNQ 450
S +
Sbjct: 292 SGR 294
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 307 FLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA 483
F I ++Q+GA VSA R++ + +E D L + + +SN P E +NA
Sbjct: 506 FAIFNSVNQLGAKVSAVQGRDVTKHLIEIWLDLLRSMMTEVEWRISNYVPTPEEYMENA 564
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 41 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 181
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
>06_03_1073 -
27373259-27373304,27373542-27373624,27373719-27374397,
27374493-27374563,27374635-27374727,27375855-27375928,
27376016-27376073,27376212-27376349
Length = 413
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +3
Query: 504 YFLPPQIRAVDLLH----KAAYRRGL-GNSLFISPKRINDISSES 623
+ L PQ+ D H K+ Y+ + GNS F + K IND SS+S
Sbjct: 152 HILTPQLNTEDTEHLPLVKSVYQSAIRGNSPFQNIKSINDGSSDS 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,019,725
Number of Sequences: 37544
Number of extensions: 344219
Number of successful extensions: 739
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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