Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021775
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14) 42 4e-04
SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22) 30 1.8
SB_55702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_45715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003) 28 5.6
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_14735| Best HMM Match : Sushi (HMM E-Value=1.8e-07) 28 5.6
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28) 28 5.6
SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038) 28 5.6
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.7
>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
Length = 593
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 101 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELG 253
A +V++ +Q + L N VA+L+ SP++RV + F AGSRYE + LG
Sbjct: 20 AKGSVRERQTVQVTTLDNGLKVASLETYSPISRVGLFFDAGSRYETDSNLG 70
>SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22)
Length = 667
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 397 QDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIIFYHPKFV 528
++K N ++E + S + RPW+ RL+ +++ YH F+
Sbjct: 615 ENKHNRSVESFDKSTSRCKSRPWQQQQLKRRLRGEVLHYHSIFI 658
>SB_55702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 596 LWRDEERVTQSTTIGCLMEQIYSTNLG 516
LWRDE R T+ T+G + ST++G
Sbjct: 45 LWRDENRRTRRKTLGAKVRPTNSTHVG 71
>SB_45715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 596 LWRDEERVTQSTTIGCLMEQIYSTNLG 516
LWRDE R T+ T+G + ST++G
Sbjct: 70 LWRDENRRTRRKTLGAKVRPTNSTHVG 96
>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 262 HATSQFGLWFITRASFEGDCDTGNWGTVV*SSYERLVR 149
H++S G WF ++ + G++G V+ + ERLVR
Sbjct: 194 HSSSNGGFWFPAISTSQNSDPLGHYGGVIYAFNERLVR 231
>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 134 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGS 226
Q S L N T+ DNGSP+T V I GS
Sbjct: 546 QFSHLVNLTWKLGRDNGSPITHVIIQQHVGS 576
>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
Length = 658
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 596 LWRDEERVTQSTTIGCLMEQIYSTNLG 516
LWRDE R T+ T+G ST++G
Sbjct: 599 LWRDENRRTRRKTLGAKARPTNSTHVG 625
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 596 LWRDEERVTQSTTIGCLMEQIYSTNLG 516
LWRDE R T+ T+G ST++G
Sbjct: 57 LWRDENRRTRRKTLGAKARPTNSTHVG 83
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 596 LWRDEERVTQSTTIGCLMEQIYSTNLG 516
LWRDE R T+ T+G ST++G
Sbjct: 1248 LWRDENRRTRRKTLGAKARPTNSTHVG 1274
>SB_14735| Best HMM Match : Sushi (HMM E-Value=1.8e-07)
Length = 305
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 596 LWRDEERVTQSTTIGCLMEQIYSTNLG 516
LWRDE R T+ T+G ST++G
Sbjct: 77 LWRDENRRTRRKTLGAKARPTNSTHVG 103
>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
Length = 336
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 596 LWRDEERVTQSTTIGCLMEQIYSTNLG 516
LWRDE R T+ T+G ST++G
Sbjct: 285 LWRDENRRTRRKTLGAKARPTNSTHVG 311
>SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)
Length = 406
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 596 LWRDEERVTQSTTIGCLMEQIYSTNLG 516
LWRDE R T+ T+G ST++G
Sbjct: 355 LWRDENRRTRRKTLGAKARPTNSTHVG 381
>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1296
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 34 ENGIQNSRRPLYSSCYDQGLRPSCAGSKER 123
E GI RR LYS C+D+ +R ER
Sbjct: 156 ETGICPVRRELYSQCFDELIRQVTINCAER 185
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,604,993
Number of Sequences: 59808
Number of extensions: 407723
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -