Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021775
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical ... 42 5e-04
Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical pr... 41 7e-04
AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical ... 41 7e-04
AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical ... 41 7e-04
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 33 0.13
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 30 1.6
U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical pr... 29 3.7
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 29 3.7
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 29 3.7
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/87 (26%), Positives = 43/87 (49%)
Frame = +1
Query: 241 SRIGMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDAL 420
++ G+SH +R+ G T+ + LSQ G + + R+L +L ++ + L
Sbjct: 59 NQAGLSHTIRNFVGRDTQEYFGNTVVWTLSQTGGVLKSFTSRDLFGVSLTIPRESTSVGL 118
Query: 421 EILNNLVSNQEFRPWELNDNAPRLKYD 501
+L + N F+PWE+ D P ++ D
Sbjct: 119 SVLGQVAGNPGFKPWEVEDVLPTMRAD 145
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 531 VDLLHKAAYRR-GLGNSLFISPKRINDISSESLQLFA 638
VD +HKAAYR GLGNS++ +I I + +L FA
Sbjct: 156 VDQIHKAAYRNGGLGNSIYAPCSKIGSICTSTLSSFA 192
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 146 LPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELG 253
L N V +D+ P+ + +AF+AGSRYE + G
Sbjct: 27 LGNGLTVGTIDSHKPIAHLVLAFRAGSRYEKANQAG 62
>AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical
protein T24C4.1 protein.
Length = 427
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = +1
Query: 250 GMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 429
G+ H +R+ G ++ + + GA +++ R++ + +D+ AL IL
Sbjct: 61 GLVHHVRNFVGRDAQSYPGLQLVWSSAASGANLNSFATRDIFGVQISVARDQAAYALSIL 120
Query: 430 NNLVSNQEFRPWELNDNAPRLKYDI 504
++ + F+PWEL D P + D+
Sbjct: 121 GHVAAKPAFKPWELEDVTPTILADL 145
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 101 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELG 253
AA +K + L N V + +N ++++ +AF+AGSRYE + G
Sbjct: 11 AAIKTQKPTGSLKTKLNNGLKVVSQENNGAISQLILAFRAGSRYEKVTQPG 61
>Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/76 (23%), Positives = 39/76 (51%)
Frame = +1
Query: 250 GMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 429
G++H++R++ G N + +Q G ++A +R+++ + +D+ L +L
Sbjct: 79 GLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLL 138
Query: 430 NNLVSNQEFRPWELND 477
L N F+PW++ D
Sbjct: 139 GQL-GNNAFKPWDVED 153
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 101 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELG 253
+A A V+ +++VL N V++++ + + +AF+AGSRY+P + G
Sbjct: 29 SAAAKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQG 79
>Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/76 (23%), Positives = 39/76 (51%)
Frame = +1
Query: 250 GMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 429
G++H++R++ G N + +Q G ++A +R+++ + +D+ L +L
Sbjct: 65 GLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLL 124
Query: 430 NNLVSNQEFRPWELND 477
L N F+PW++ D
Sbjct: 125 GQL-GNNAFKPWDVED 139
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 101 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELG 253
+A A V+ +++VL N V++++ + + +AF+AGSRY+P + G
Sbjct: 15 SAAAKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQG 65
>AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/76 (23%), Positives = 39/76 (51%)
Frame = +1
Query: 250 GMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 429
G++H++R++ G N + +Q G ++A +R+++ + +D+ L +L
Sbjct: 79 GLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLL 138
Query: 430 NNLVSNQEFRPWELND 477
L N F+PW++ D
Sbjct: 139 GQL-GNNAFKPWDVED 153
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 101 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELG 253
+A A V+ +++VL N V++++ + + +AF+AGSRY+P + G
Sbjct: 29 SAAAKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQG 79
>AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/76 (23%), Positives = 39/76 (51%)
Frame = +1
Query: 250 GMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 429
G++H++R++ G N + +Q G ++A +R+++ + +D+ L +L
Sbjct: 65 GLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLL 124
Query: 430 NNLVSNQEFRPWELND 477
L N F+PW++ D
Sbjct: 125 GQL-GNNAFKPWDVED 139
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 101 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELG 253
+A A V+ +++VL N V++++ + + +AF+AGSRY+P + G
Sbjct: 15 SAAAKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQG 65
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 26 KLTKMASKTLVAPFIRHVTIRGYAQAAP-AVKKDVRIQ---SSVLPNKTFVAALDNGSPV 193
KLT + SK L+ P H T + P VK +Q ++ LP + +V++ N P+
Sbjct: 1030 KLTVLESKKLIKPIKAHTTPTAASNTTPIPVKTTTTLQTTTATTLP-ENYVSSSTN-RPL 1087
Query: 194 TRVTIAFKAGSRYEPQAEL 250
T + I+ K GS P ++
Sbjct: 1088 TPIIISMKLGSTSSPSPQI 1106
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
protein ZK1193.2 protein.
Length = 1250
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 469 LNDNAPRLKYDIIFYHPKFV 528
LND APR+ DI++ HPK++
Sbjct: 15 LNDAAPRVINDILYQHPKWI 34
>U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical
protein F56D2.1 protein.
Length = 471
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +2
Query: 38 MASKTLVAPFIRHVTIRGYAQAAPAVK-KDV-----RIQSSVLPNKTFVAALDNGSPVTR 199
MA + V+ +R A+ AV KDV + + + L N V DNGS
Sbjct: 1 MALRLAVSSALRPALNSQVRNASSAVSVKDVLASAPQAEVTTLKNGFRVVTEDNGSATAT 60
Query: 200 VTIAFKAGSRYEPQAELGCRMYYDQLL 280
V + + GSR+E + G + ++L+
Sbjct: 61 VGVWIETGSRFENEKNNGVAHFLERLI 87
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 LPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLR-RQ*RKMLGSNQVF 146
LP + K L +W+ K ML ATP+LR + +K+L N +F
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 LPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLR-RQ*RKMLGSNQVF 146
LP + K L +W+ K ML ATP+LR + +K+L N +F
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,357
Number of Sequences: 27780
Number of extensions: 300206
Number of successful extensions: 722
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -