Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021775
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 550 QPIVVDWVTRSSSRQR 597
           QPI   W+TRS +R++
Sbjct: 81  QPISYKWITRSGTREQ 96


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 219 LALVMNHKPNWDVACTTISCW 281
           LAL +NH PN+D        W
Sbjct: 658 LALWLNHSPNYDQVTNWYMGW 678



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 6   ILPKVSKNLRKWHPKLSSPPL 68
           +LPK++  + +W+P   + P+
Sbjct: 519 VLPKLTLEVEEWNPLTDTVPI 539


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 28  TYENGIQNSRRPLYSS 75
           TY NG+   +RP++S+
Sbjct: 300 TYSNGLPFPQRPIWSN 315


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 28  TYENGIQNSRRPLYSS 75
           TY NG+   +RP++S+
Sbjct: 300 TYSNGLPFPQRPIWSN 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,342
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)