Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021775
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    58   5e-09
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    58   6e-09
At5g51200.1 68418.m06349 expressed protein                             29   2.6  
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy...    27   7.9  

>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 29/85 (34%), Positives = 49/85 (57%)
 Frame = +1

Query: 250 GMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 429
           G +H+L   A  +T N S F + R++  IG   SAS  RE + YT++A +  + + +E+L
Sbjct: 114 GATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVL 173

Query: 430 NNLVSNQEFRPWELNDNAPRLKYDI 504
            + V N  F  WE+N+   ++K +I
Sbjct: 174 IDSVRNPAFLDWEVNEELRKVKVEI 198


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 28/85 (32%), Positives = 49/85 (57%)
 Frame = +1

Query: 250 GMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 429
           G +H+L   A  +T N + F + R++  IG   SAS  RE + YT++A +  + + +E+L
Sbjct: 118 GATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVL 177

Query: 430 NNLVSNQEFRPWELNDNAPRLKYDI 504
            + V N  F  WE+N+   ++K +I
Sbjct: 178 IDSVRNPAFLDWEVNEELRKMKVEI 202


>At5g51200.1 68418.m06349 expressed protein
          Length = 1808

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = +1

Query: 202 HNRLQSWLSL*TTSRIGMSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYY 381
           H+ +    ++ T S   M H+      + +KN+  FL+   L      V  S D  +   
Sbjct: 328 HDGISGMDTISTASTTDMGHICSCLESIFSKNVFQFLLDNVLRTAAYQVKESKDMAMSVL 387

Query: 382 TLEATQDKLNDALE 423
               T D L+ +++
Sbjct: 388 NSYRTSDPLDGSMQ 401


>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 520

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 379 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIIF 510
           ++   T+ K+ND L  L N  +N+E    +L D   R  YDI F
Sbjct: 151 FSASTTKTKVNDGLVPLFNHFANEEI-VVDLEDVFQRFMYDITF 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,306
Number of Sequences: 28952
Number of extensions: 286317
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)