Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021772X
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583...    31   0.63 
06_03_1012 - 26893828-26894052,26894137-26894355,26894513-268946...    29   1.9  
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275...    28   4.4  

>02_01_0783 +
           5835517-5835861,5835989-5836060,5836140-5836220,
           5836293-5836490,5836576-5836647,5836803-5836889,
           5836986-5837084,5837191-5837274,5837351-5837437,
           5837578-5837649,5837912-5838025,5838127-5838214,
           5838293-5838388,5838507-5838694
          Length = 560

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 463 SVLWFRHGLRLHDNP 507
           +++WFR GLR+HDNP
Sbjct: 15  AMVWFRKGLRVHDNP 29


>06_03_1012 -
           26893828-26894052,26894137-26894355,26894513-26894652,
           26894790-26895198
          Length = 330

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 457 GGSVLWFRHGLRLHDNPFFIRRW 525
           G +++WFR+ LR+ DN   +R W
Sbjct: 84  GVAIVWFRNDLRVLDNEAVVRAW 106


>04_04_0072 +
           22524974-22525310,22526334-22526552,22526826-22527532,
           22527664-22528482
          Length = 693

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 457 GGSVLWFRHGLRLHDNP 507
           G +V+WFR  LR+ DNP
Sbjct: 11  GRTVVWFRRDLRVEDNP 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,772,312
Number of Sequences: 37544
Number of extensions: 193052
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)