Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021772X
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ...    35   0.032
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family...    30   1.2  
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    29   2.8  
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic...    28   3.7  
At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PH...    27   6.5  

>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
           photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
           (Nucleic Acids Res. 26 (2), 638-644 (1998))
          Length = 556

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 460 GSVLWFRHGLRLHDNP 507
           GS++WFR GLR+HDNP
Sbjct: 25  GSLIWFRKGLRVHDNP 40


>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
           protein / DNA photolyase family protein contains Pfam
           domain, PF00875: deoxyribodipyrimidine photolyase
          Length = 581

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 463 SVLWFRHGLRLHDNPFFIRRWKKRAAL 543
           +V+WF+H LR+ D+P  +   K RA +
Sbjct: 37  AVVWFKHDLRVDDHPGLLAASKHRAVI 63


>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 457 GGSVLWFRHGLRLHDNP 507
           G S++WFR  LR+ DNP
Sbjct: 12  GCSIVWFRRDLRVEDNP 28


>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
           to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
           similar to Deoxyribodipyrimidine photolyase (DNA
           photolyase) (Photoreactivating
           enzyme)(SP:Q55081){Synechocystis sp.}
          Length = 526

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 457 GGSVLWFRHGLRLHDNPFFIRRW 525
           G ++LWFR+ LR+ DN    + W
Sbjct: 41  GVTILWFRNDLRVLDNDALYKAW 63


>At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PHR2)
           identical to photolyase/blue light photoreceptor PHR2
           [Arabidopsis thaliana] GI:3319288; contains Pfam domain,
           PF00875: deoxyribodipyrimidine photolyase
          Length = 447

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 463 SVLWFRHGLRLHDN 504
           +V+WFR+ LR+HDN
Sbjct: 117 AVVWFRNDLRVHDN 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,021,166
Number of Sequences: 28952
Number of extensions: 170056
Number of successful extensions: 352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)