Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021771X
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.7  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 16  CAVCPYNTITRVLRSRITKNHSLKYRVS 99
           C  C Y  + + + +   K+HS  YR S
Sbjct: 261 CNKCDYTCVNKSMLNSHMKSHSNVYRYS 288


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 16  CAVCPYNTITRVLRSRITKNHSLKYRVS 99
           C  C Y  + + + +   K+HS  YR S
Sbjct: 19  CNKCDYTCVNKSMLNSHMKSHSNVYRYS 46


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 461 PHPAPGTHHPRPTRGTSLAPSAP 393
           P P P T +P P    S+  S P
Sbjct: 205 PEPVPSTPYPPPGSLGSMGVSVP 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,680
Number of Sequences: 336
Number of extensions: 1996
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)