Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021771X
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0201 - 27477392-27479728                                         29   3.8  
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130...    28   6.7  
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107           28   6.7  
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    28   6.7  
02_04_0188 - 20766093-20766449,20766526-20766624,20766717-207668...    28   6.7  
01_01_1063 - 8386813-8387236,8387322-8387779                           28   6.7  

>01_06_0201 - 27477392-27479728
          Length = 778

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 300 SVVYSNCTSPHE*LFPISVRTR*NRLVDLFYKFSNEELNYLKL 172
           SVV+ +  SP + L P+ + T+  RLV  +Y    +  N L+L
Sbjct: 140 SVVWQSFDSPTDTLLPLQLLTKDKRLVSGYYSLYYDTDNVLRL 182


>05_01_0184 -
           1298640-1298751,1298936-1299027,1299695-1299910,
           1300045-1300614
          Length = 329

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 461 PHPAPGTHHPRPTRGTSLAPSAPALRT 381
           P PAPG  H  P + + LA S P   T
Sbjct: 117 PSPAPGAQHLPPAKPSPLAGSPPGAAT 143


>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
          Length = 662

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 461 PHPAPGTHHPRPTRGTSLAPSAPALRT 381
           P PAPG  H  P + + LA S P   T
Sbjct: 117 PSPAPGAQHLPPAKPSPLAGSPPGAAT 143


>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 388 FAPTVTALGTSHLYNPLYQHDSFECFT*LLSSLFQLHIAPRIAFSNIRPHP 236
           F  T+  + +     P Y H S +C   LLS +F  + A RI    IR HP
Sbjct: 234 FRKTIGRIMSIQYKIPEYVHVSQDCRQ-LLSRIFVANPAKRITIREIRNHP 283


>02_04_0188 -
           20766093-20766449,20766526-20766624,20766717-20766821,
           20769149-20769241,20769673-20769765,20770075-20770176,
           20770294-20770368,20770465-20770584
          Length = 347

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 388 FAPTVTALGTSHLYNPLYQHDSFECFT*LLSSLFQLHIAPRIAFSNIRPHP 236
           F  T+  + +     P Y H S +C   LLS +F  + A RI    IR HP
Sbjct: 191 FRKTIGRIVSIQYKIPEYVHISQDCRQ-LLSRIFVANPAKRITIREIRNHP 240


>01_01_1063 - 8386813-8387236,8387322-8387779
          Length = 293

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 461 PHPAPGTHHPRPTRGTSLAPSAPAL 387
           PHP P  H P P    + APSAP +
Sbjct: 248 PHPHP--HQPPPPAAAATAPSAPEI 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,242
Number of Sequences: 37544
Number of extensions: 233758
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)