Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021771X
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.1  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +1

Query: 16  CAVCPYNTITRVLRSRITKNHSLKYRVSELSNIKELIRVC*SVEI*KKK 162
           C  C Y+ + + + +   K+HS  Y+    +N     + C S+++  +K
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSHSNVYQY-RCANCTYATKYCHSLKLHLRK 66


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 419 GTSLAPSAPALRTDGHRTRHIT 354
           G S     P  R  GHR RH T
Sbjct: 178 GISNEVELPQFRVLGHRQRHST 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,679
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)