Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021769
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 30 0.26
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 30 0.34
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 28 1.4
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 27 1.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.4
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 27 3.2
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 3.2
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 27 3.2
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo... 26 4.2
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 4.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.5
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 26 5.5
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 26 5.5
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.3
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 7.3
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 9.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.7
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 9.7
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 9.7
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 30.3 bits (65), Expect = 0.26
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -1
Query: 233 SQALASTSAAELKSLTAKWRRPAPSNSAGVAVDTSIISAIAKRIY 99
+Q+ STS + S+ + + P SNS V TSIIS+IA Y
Sbjct: 791 TQSSISTSVSSQSSMNSSYSSPISSNS--VTSSTSIISSIASSSY 833
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 497 YINKEAELKP-AQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDDV 652
Y NKE E + + TS+ SS D P+++NDDAN+ + D+
Sbjct: 18 YENKENEYQTNITNETSNVQNLSSGNDDQQYPNSTNDDANNGLTASQAKLQDI 70
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -3
Query: 135 YFNHISHSEKNLFLILQNIVNNLTVSGYFVIKCGKHNTLINVRVF 1
++N+ E+NL L +++V +V+ F+ CG +T +N+R F
Sbjct: 277 FYNNSVLEEQNL-LFYRDLVKKYSVNPQFLDACGLGSTWLNMRGF 320
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 184 AVRDFNSAAEVLAKACELLAKEHGTQRTSVLRHIY 288
A+ + ++ A E+ AKE QR V+ HIY
Sbjct: 56 AIEQLKAHVKITAPEFEIAAKEEKRQRHDVMAHIY 90
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 560 SSEVTDNAEPSTSNDDANDESVVN 631
S E NA PST DD N+E V N
Sbjct: 249 SIEAAANAVPSTPADDENNEEVEN 272
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/50 (22%), Positives = 28/50 (56%)
Frame = +2
Query: 509 EAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDDVDN 658
E+ KP+ ++ +++ + D+++PS + +N ES +++ S D +
Sbjct: 289 ESNSKPSTPVPTEELTSTTLLNDSSDPSDNFTPSNTESTIDLPSATDASH 338
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 542 SDAPGASSEVTDNAE-PSTSNDDANDESVVNMGSEDD 649
S + SSE+TDN E S S+ E + + SED+
Sbjct: 92 SSSSSESSEITDNEEVASASSKSTKSEELTDEESEDE 128
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 503 NKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDE 619
NK+ +L A ST SD+ GASS + + SN A E
Sbjct: 157 NKKKQLVSAISTNSDSQGASSNIIPTPK-YDSNSPAGHE 194
>SPBC4B4.06 |vps25||ESCRT II complex subunit
Vps25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 203 RLLKYWPKLVNCWLKNMGHSGPVC 274
R + W ++ WL +MG G +C
Sbjct: 101 RSISEWGNMILKWLSDMGREGSIC 124
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 500 INKEAEL-KPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDDV 652
+ K+ +L K Q + + G SS +N + N + DE+++ ED++
Sbjct: 15 LKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEEDNI 66
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 491 GRYINKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSED 646
G Y+N ++ + S P S E T + S N D + S+ + GS D
Sbjct: 44 GSYLNDKSSFQTPLRNGSYQPKGSLEFTPLLQSSNKNSDKYNGSLGDKGSFD 95
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 435 CEPEKSKTEHNEAESTSMEADTSTKKLS*N 524
C +KS N SME D STKK+S N
Sbjct: 354 CHVDKSLPGINAPSVLSMENDFSTKKMSSN 383
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 83 FCKI-KNKFFSLWLI*LK-YQQQLRRSYLVLVDATWLLETLIRLLKYWPKLVNCW 241
F K+ K F+ +W+ YQQ+L + LV W+ ++ +W + W
Sbjct: 41 FLKLWKGLFYCMWMADKPLYQQKLSDNLAALVPIVWIDNRILFQSTFWETMGREW 95
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 500 CICLH*SRFSLIVFSFTLFR 441
C+CL R LI F+FT FR
Sbjct: 202 CLCLQKKRRVLIPFAFTSFR 221
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 524 PAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSE 643
P STT+ + +S + S+S+ ++ SVV++ SE
Sbjct: 153 PTNSTTNSSISWNSSTSAATNTSSSSSSSSQSSVVSVNSE 192
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 533 STTSDAPGASSEVTDNAEPSTSNDDANDES 622
S S AP ++S + +PST+ND S
Sbjct: 393 SNPSTAPASASPLASTLKPSTANDTNGSSS 422
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 364 LPDPGIPSPKTPLSSLDKPN 305
LP GI TPLSS+ +PN
Sbjct: 60 LPKRGILKTSTPLSSIKQPN 79
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 130 EVSTATPAELL--GAGRRHLAVRDFNSAAEVLAKACELLAKEHGTQRTSVLRHI 285
EVS A P +L G G HL R +L C+L+ ++ + ++I
Sbjct: 59 EVSEAAPFRVLDLGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLAKNI 112
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -1
Query: 272 TLVRCVPCSLANSSQALASTSAAELKSLTAKWRRPAPSNSAGVAVDTSI 126
T C + A++ STS+ S T P PS S TSI
Sbjct: 73 TSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSI 121
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 551 PGASSEVTDNAEPSTSNDDANDESVVNMGS 640
P S + D + S+S +AND +V N+GS
Sbjct: 133 PSNSPQAFDLTQGSSSTHNANDFTVNNVGS 162
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 500 INKEAELKPAQSTTSDAPGAS-SEVTDNAEPSTSNDDANDESVVNMGSEDDVD 655
+N E S D+ S SE + EP T+ D +D+ V EDD D
Sbjct: 89 LNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDKHVTVEIVEDDDD 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,345
Number of Sequences: 5004
Number of extensions: 44244
Number of successful extensions: 196
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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