Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021769
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0031 + 8356046-8356361,8356439-8356648,8356735-8357043,835... 36 0.022
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 31 0.61
06_03_1487 + 30477615-30477658,30477778-30477891,30477941-304780... 31 0.81
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156... 30 1.4
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 30 1.9
12_02_0430 + 18995762-18995820,18995900-18996491 29 3.3
07_01_0166 + 1164903-1165144,1165839-1166074,1166719-1166781,116... 29 3.3
05_07_0357 - 29533496-29533556,29533638-29533770,29533857-295339... 29 4.3
02_01_0457 - 3283759-3285240 29 4.3
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 28 5.7
02_01_0264 - 1748883-1748888,1748943-1749017,1749453-1749868,175... 28 5.7
11_04_0293 + 15926561-15928834 28 7.6
03_06_0602 - 34995080-34995163,34995304-34995395,34995505-349955... 28 7.6
02_05_0814 - 31970558-31971126,31971242-31971413 28 7.6
02_05_0115 - 25965275-25965517,25965806-25965961,25966103-259661... 28 7.6
>10_05_0031 +
8356046-8356361,8356439-8356648,8356735-8357043,
8357225-8357347,8357428-8357502,8357597-8357687,
8357775-8357866,8357890-8358020
Length = 448
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 482 FNGGRYINKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDAND--ESVVNMGSEDD 649
++ G+ ++ E A+ SD+P S ++ + S+S+ +AND ++VV++GSE+D
Sbjct: 276 YDEGKARLEDVEEDSAEDYVSDSPRGSPTYAESGDSSSSDGEANDDVDAVVDVGSEED 333
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 488 GGRYINKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSED 646
GG N E E + SD P S E+ N + +N +A+D + V+ SE+
Sbjct: 96 GGIKCNNEEEEGEEDAEKSDTPENSKEIDGNNQSQEANGEADDINDVSANSEN 148
>06_03_1487 +
30477615-30477658,30477778-30477891,30477941-30478028,
30478186-30478230,30478330-30478410,30478498-30478608,
30478907-30478927
Length = 167
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 512 AELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDDVDN 658
A +ST AP E D E S + NDE + GSE+D D+
Sbjct: 118 AAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDED-DDEGSEEDEDD 165
>08_01_0186 -
1561695-1561958,1562041-1562183,1562260-1562326,
1562417-1562529,1562603-1562671,1563831-1563870,
1563965-1564035,1565872-1566027,1566104-1566152,
1566228-1567631
Length = 791
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 527 AQSTTSDAPGASSEVTD---NAEPSTSNDDANDESVVNMGSEDD 649
++S++SD+ +SS +D N PSTS N +S V + E+D
Sbjct: 531 SESSSSDSDSSSSSGSDLDVNVPPSTSGAKDNTQSAVRLDQEND 574
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = -2
Query: 361 PDPGIPSPKTPLSSLDKPNSAWPYH------KYASAHWSA-VSHVL*PT-VHKLWPVLQQ 206
P P +P+P LSS ++P+ +PY+ Y AH SA VS PT V + P
Sbjct: 219 PAPSMPAPAPTLSSPERPHGGFPYYSPQPVMSYNVAHPSASVSSYYAPTPVMSMQPTPMP 278
Query: 205 P 203
P
Sbjct: 279 P 279
>12_02_0430 + 18995762-18995820,18995900-18996491
Length = 216
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 515 ELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSED 646
+L + S +SD+P S E T+ S DD +DES++ + D
Sbjct: 109 DLTGSLSESSDSP-VSEECTEEGSVSDDGDDDDDESLIEISLVD 151
>07_01_0166 +
1164903-1165144,1165839-1166074,1166719-1166781,
1166808-1167017,1167098-1167263,1167537-1167780,
1167970-1168362
Length = 517
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 255 DTADQCAEAYLWYGQALLGLSRDESGVLGDGMPGSGN 365
+ A +C Y YG ALL ++DE+ LG+ S N
Sbjct: 87 ELAPECVSTYFKYGCALLYKAQDEADPLGNVPKSSSN 123
>05_07_0357 -
29533496-29533556,29533638-29533770,29533857-29533953,
29534073-29534141,29534221-29534378,29534483-29534527,
29534598-29534625
Length = 196
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 491 GRYINKEAELKPAQSTTSDAPGASSEVTDNAEPSTSN-DDANDESVVNMGSEDD 649
G+ KE E K T S A + + V D+ + S+ DD+ DE + +DD
Sbjct: 25 GKVEGKENEQKKQGKTDSSASKSKAAVNDDDDDDDSDEDDSEDEDLSPEDDDDD 78
>02_01_0457 - 3283759-3285240
Length = 493
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 482 FNGGRYINKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDDVDN 658
F G R +++ ++TTSD+P S+ +D + S S + N ++++ + D+ N
Sbjct: 301 FEGNRASSRDKVYTNGEATTSDSPECSN--SDGKQASLSLPNLNAFDIISLSTGFDLSN 357
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 367 TLPDPGIPSPKTPLSSL-DKPNSAWPYHKYASAHWSAVSHVL*PT 236
TLP P P P+ PL+ + +A YA+A SA H+L PT
Sbjct: 30 TLPPPPSPPPRHPLAPVAASAVAAVDAGDYAAALASAAPHLLPPT 74
>02_01_0264 -
1748883-1748888,1748943-1749017,1749453-1749868,
1750095-1750215,1750423-1750533,1750636-1750737,
1750896-1750989,1751145-1751194,1751323-1751424,
1751794-1751871,1751999-1752028,1752322-1753050
Length = 637
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 187 VRDFNSAAEVLAKACELLAKEHGTQRTSVL 276
VR+F A V AC + AK H Q T++L
Sbjct: 209 VREFERAFAVKFPACSIAAKRHVDQSTTIL 238
>11_04_0293 + 15926561-15928834
Length = 757
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 536 TTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDDVD 655
+ +D PG SS +N +P + D +E ++ +DD D
Sbjct: 337 SVNDRPGGSSWDEENVQPGDDDLDEEEEEYLSDDGKDDDD 376
>03_06_0602 -
34995080-34995163,34995304-34995395,34995505-34995564,
34995900-34995993,34996086-34996125,34996334-34996393,
34997377-34997507
Length = 186
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 500 INKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNM 634
I E + K ++T S+ SE NAE S +D+S+VN+
Sbjct: 123 IQYELQRKKEKATLSELEKTFSEKITNAEESLKKMKQDDKSIVNL 167
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 367 TLPDPGIPSPKTPLSSLDKPNSAWP 293
T P+P P+P TP S P + +P
Sbjct: 153 TTPNPSTPTPTTPYPSTPMPTTPYP 177
>02_05_0115 -
25965275-25965517,25965806-25965961,25966103-25966128,
25966177-25966289,25966428-25966541,25968328-25968461,
25968565-25969083
Length = 434
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 112 AMADMIEVSTATPAELLGAGRRHLAVRDFNSAAEVLAKACELLAKEHGTQRTS 270
A DM++V T A RR VRD+NS +L + T+R S
Sbjct: 217 AWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGRTILRATSVWVMMHKKTRRLS 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,543,994
Number of Sequences: 37544
Number of extensions: 290335
Number of successful extensions: 1112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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