Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021769
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_508| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.63 
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_25767| Best HMM Match : F-box (HMM E-Value=9.7e-09)                 30   1.9  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      30   1.9  
SB_49901| Best HMM Match : DoxX (HMM E-Value=6.2)                      29   3.4  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                29   3.4  
SB_58196| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-10)                 29   4.4  
SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)                   29   4.4  
SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               28   5.9  
SB_3411| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 250 HGTQRTSVLRHIYGMAKHY*VCPETKVEFWEMVCQDQ 360
           HGTQ+T+  R +Y   KH    P+T +   E VC ++
Sbjct: 33  HGTQKTNYSRCVYAQIKHN--TPKTGIRLRERVCPEE 67


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 521 KPAQSTTSDAPGASSEVTDNAEPSTSNDDANDE--SVVNMGSEDDVD 655
           KP + T S + G+SSE +D+    + +D ++DE  S+VN  ++   D
Sbjct: 402 KPHRKTLSSSSGSSSEGSDSDSSDSDSDSSDDENHSLVNSPTKTPAD 448


>SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 167 LVDATWLLETLIRLLKYWPKLVNCW 241
           LVD TW+  TL+RLL+    L NCW
Sbjct: 27  LVDLTWI-RTLVRLLEKRRPLRNCW 50


>SB_25767| Best HMM Match : F-box (HMM E-Value=9.7e-09)
          Length = 250

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 524 PAQSTTSDAPGASS-EVTDNAEPSTSNDDANDESVVNMGSEDDVDN 658
           P    +S+A  A++  +    +  TSNDD+N++   N   +DD D+
Sbjct: 92  PLDDPSSNASNANAYNIVTGCQDDTSNDDSNNDDSNNDDDDDDDDD 137


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 506 KEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDDVD 655
           ++AE K A+   S +      +  + + + SND ++DE  +N  S+ +VD
Sbjct: 74  RKAEKKKAKKNKSASKRQPKHINQSDDMAKSNDQSDDEKELNDQSDGEVD 123


>SB_49901| Best HMM Match : DoxX (HMM E-Value=6.2)
          Length = 143

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 248 SLANSSQALASTSAAELKSLTAKWRRPAPS--NSAGVAVDTSIISAIA 111
           S  NS +A     + +L+SL  +W  P     ++AGV V  S+ + +A
Sbjct: 80  SWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSVTATLA 127


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 281 CLSTLVRCVPCSLANSSQALASTSAAELKSLTAKWRRPAPSNSAGVAVD 135
           CL+  +R   C L     AL S S AE+KS T K   PA  +   +  D
Sbjct: 141 CLAVKMRTFTCVLLILVIALVSISTAEMKSKTKKPAVPAKKSEGPMKKD 189


>SB_58196| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-10)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 80  IFCKIKNKFFSLWLI*LKYQQQLRRSYLVLVDATWLLETLIRLLKY 217
           +F  ++  + ++W   L+++    R+Y+V +  TW    +  L+ Y
Sbjct: 133 VFISVERMYATVWP--LRHRNTRHRTYMVFIGVTWCAGAVFALMSY 176


>SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)
          Length = 269

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 512 AELKPAQSTTS--DAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDD 649
           AE KP  S T   D P A++EVT        ND++   S     +ED+
Sbjct: 216 AENKPESSATEGGDKPEATAEVTKEETTKEGNDESEKPSEDTPNTEDN 263


>SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 578 NAEPSTSNDDANDESVVNMGSEDDVDN 658
           + EPSTS+ D+ DE+  +   EDD  +
Sbjct: 332 HGEPSTSSSDSEDEATSDCDDEDDASD 358


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 108 KNLFLILQNIVNNLTVSGYFVI 43
           KN+ +++ NIVNN+ +S   VI
Sbjct: 156 KNIIIVINNIVNNIIISNNIVI 177


>SB_3411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 521 KPAQSTTSDAPGASSEVTDNAEPSTSNDDA-NDESVVNMGSEDDVDN 658
           K  Q +  D  G +S +   A  S +NDD  N++S+++  + DD DN
Sbjct: 11  KVRQLSDDDDVGNNSALAAAALNSNNNDDDDNNKSIIDNSNNDDDDN 57


>SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +2

Query: 482 FNGGRYINKEAELKPAQSTTSDAPGASSEV-TDNAEPSTSNDDANDESVVNMGSEDDVDN 658
           FNGG   ++E E     +   D  G   +   DN +    +DD +D    N   ++D DN
Sbjct: 514 FNGGDRYDEEKERYDDDNDDDDDDGDDDDDDVDNDDDDDDDDDDDDNDGDNDDDDNDNDN 573


>SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 503 NKEAELKPAQSTTSDAPGASSEVTD--NAEPSTSNDDANDESVVNMGSEDDVD 655
           N E E +      SD PG  ++V D  ++E   S DD +D+   + G  DD D
Sbjct: 121 NTEGEEEEGMERLSDLPGEGTDVGDHGDSEHDGSYDDDDDD---DSGMSDDQD 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,263
Number of Sequences: 59808
Number of extensions: 330908
Number of successful extensions: 1553
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)