Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021769
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 31 0.90
At5g56090.1 68418.m06998 cytochrome oxidase assembly family prot... 29 2.1
At3g62850.1 68416.m07061 zinc finger protein-related contains Pf... 29 2.1
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 29 2.7
At4g11750.1 68417.m01874 kelch repeat-containing F-box family pr... 29 2.7
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof... 29 2.7
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 29 2.7
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 29 3.6
At5g58080.1 68418.m07268 two-component responsive regulator fami... 28 6.3
At5g03680.1 68418.m00327 trihelix DNA-binding protein, putative ... 28 6.3
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 28 6.3
At3g55760.2 68416.m06196 expressed protein 28 6.3
At3g55760.1 68416.m06195 expressed protein 28 6.3
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont... 27 8.4
At2g21540.1 68415.m02563 SEC14 cytosolic factor, putative / phos... 27 8.4
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 128 LKYQQQLRRSYLVLVDATWLLETLIRLLKYWPKLVNCWLK 247
LK +++L+ L+++D TW I L W KL+ C +K
Sbjct: 288 LKEKEELKVRNLIVLDGTWSKARRIYLENPWLKLLRCHVK 327
>At5g56090.1 68418.m06998 cytochrome oxidase assembly family protein
contains PF02628: Cytochrome oxidase assembly protein
Length = 457
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 278 LSTLVRCVPCSLANSSQALASTSAAELKSLTAKWRRPAPS 159
+STL+ VP SL ++ QA A T + L RRP+PS
Sbjct: 404 VSTLLSYVPVSLGSAHQAGALTLLTLMLLLNHTLRRPSPS 443
>At3g62850.1 68416.m07061 zinc finger protein-related contains Pfam
profiles PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger, C2H2 type
Length = 472
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -3
Query: 321 LWTNLIVLGHTINMPQHTGPLCPMFFSQQFTSFGQYFSSRI--KVSNSQVASTSTK 160
LW +L+V G + P H PL +F S T + + K S SQ STK
Sbjct: 379 LWKSLLVAGVFFSSPYHHHPLMTLFLSYIITLSVSETRNHVLRKCSQSQRGEPSTK 434
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 497 YINKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESV 625
Y++K AELK + + ++ A E D + S DDA ++ V
Sbjct: 164 YLDKAAELKAEYNKSLESNDADEEEEDEEKQSDDVDDAEEKQV 206
>At4g11750.1 68417.m01874 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 386
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 194 TLIRLLKYWPKLVNCWLKNMGHSGPVC*GIFMVWPSTIRFVQRRKWSFGRWYARIRQC 367
T +RLL Y K+V W KN+G P M+W + I +R S + Y +I C
Sbjct: 315 TCVRLLGYSGKVVVLWEKNVGGGDP---QKKMIWCAEIALERR---SANKIYGKIEWC 366
>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 301
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 506 KEAELKPAQSTTSDAPGASSEVTDN---AEPSTSNDDANDESVVNMGSEDD 649
KE L +++ SD+ + D+ A P D+ +DE +VN ED+
Sbjct: 12 KEESLSSSRTVGSDSNSEETNANDDLSFANPVDEEDERDDEVIVNKSLEDE 62
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 509 EAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDES 622
EAE K + + DAP A S+ D E DD++ ES
Sbjct: 364 EAEKKNEEEESKDAP-AESDAEDEPEDDEGGDDSDSES 400
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 367 TLPDPGIPSPKTPLSSLDKPNSAWP 293
T+P P +PSPK P S+ P+ P
Sbjct: 38 TVPSPKVPSPKYPSPSIPSPSVPTP 62
>At5g58080.1 68418.m07268 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 581
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +2
Query: 500 INKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSEDDVD 655
I A+L P + S P AS + D S DD++ E GSE D D
Sbjct: 83 IKSYAKLLPPSESDS-VPSASRKRKDKVNDSGDEDDSDREEDDGEGSEQDGD 133
>At5g03680.1 68418.m00327 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 591
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/46 (23%), Positives = 28/46 (60%)
Frame = +2
Query: 494 RYINKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVN 631
+Y+ + +KP S+ + ++E+ +N+E T N++ +D+++ N
Sbjct: 368 QYLTGKPLIKPLCSSPEERTNGNNEIRNNSE--TQNENGSDQTMTN 411
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 364 LPDPGIPSPKTPLSSLDKP 308
LP+P +PSPK P S+ P
Sbjct: 39 LPNPKVPSPKVPTPSVPSP 57
>At3g55760.2 68416.m06196 expressed protein
Length = 578
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 500 INKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSED 646
+ KEAE KP+ T S + NAE D+ DES + SED
Sbjct: 267 VRKEAETKPSSETLSTEHDLDLISSANAEEVARVLDSLDESSTHGVSED 315
>At3g55760.1 68416.m06195 expressed protein
Length = 578
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 500 INKEAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDESVVNMGSED 646
+ KEAE KP+ T S + NAE D+ DES + SED
Sbjct: 267 VRKEAETKPSSETLSTEHDLDLISSANAEEVARVLDSLDESSTHGVSED 315
>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 1192
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 476 IYFNGGRYINKEAELKPAQSTTSDAPGASS-EVTDNAEPSTSNDDANDESVVNM--GSED 646
I+ R N+EA+ + + + SD+ + S + +A S S ++ E+ N GS++
Sbjct: 479 IFHEEKRSENREAQARSSSDSDSDSDNSDSGSDSKSAAGSDSGSSSDSEASSNSKDGSDE 538
Query: 647 DVD 655
DVD
Sbjct: 539 DVD 541
>At2g21540.1 68415.m02563 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650
: CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus
Length = 548
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 187 VRDFNSAAEVLAKACELLAKEHGTQRTSVL 276
VR+F + AC + AK+H Q T++L
Sbjct: 186 VREFEKTFNIKLPACSIAAKKHIDQSTTIL 215
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,483,476
Number of Sequences: 28952
Number of extensions: 229959
Number of successful extensions: 800
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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