Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021768X
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    27   2.6  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   3.4  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    26   4.5  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    25   6.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.0  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   6.0  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   7.9  

>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 188 ELSSIWALPFYMTLARYSETSVRARRVVGVLPQEER 295
           + SS++ L + M  A++S TSV    +  VLP+  +
Sbjct: 96  DASSLYTLLYKMNQAQFSNTSVTLNGLATVLPKNSK 131


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 217 LYDFSKIFRNI---STCAESSRCVATGGTAASRRGCMTLN 327
           L D S + + +    TCA    C  TGG +AS  GC  LN
Sbjct: 54  LKDISPLIQQVCKNGTCAGDGFCNGTGG-SASCTGCPALN 92


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 233 LLKSYKTVTPRWTRALRLDELLILASGEAAASRIAHAAPTCHTPHR 96
           LL+ YK+  PRW    R+D   ++ +GE  A  +  A       HR
Sbjct: 239 LLQDYKSTFPRWK---RMDLHKVVPNGEEDAIELLSAMLVYDPAHR 281


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 143 LQLLQKPGSTIHQVAELSSIWALPFYMTLARYSETSVRARRVVGVLPQEERPPAVE 310
           LQLL+K G  ++    L+ I        +   +  SVR   V   LPQ +R   V+
Sbjct: 279 LQLLEKGGRLVYSTCSLNPIENEAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVD 334


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 235 IFRNISTCAESSRCVATGGTAASRRG 312
           I R +  C +  R V+ GG   SRRG
Sbjct: 21  ILRKLIGCVQRVRVVSAGGKRQSRRG 46


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 239 NILLKSYKTVTPRWTRAL-RLDELLILASGEAAASRIAHAAPTCHT 105
           +I ++ + +V PR   A   LD+L+   + ++  SRI+ A   C+T
Sbjct: 245 SIHMRQFPSVLPRRPDAFPALDQLIQKMTAKSMNSRISSATDLCYT 290


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/49 (28%), Positives = 18/49 (36%)
 Frame = +1

Query: 346 RRTSKFCSNRHRKLLPLRQXXXXXXXXXXXXXHRTRTLLLEPV*ISSQI 492
           RR S FC N      P +              H T T+L  P+  +S I
Sbjct: 484 RRRSGFCLNNFNSTPPFQPYHYEIGSGLPQQMHATNTILTNPIDPNSNI 532


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 445 RTRTLLLEPV*ISSQIVNYLYTCK*RKQTKPNNPSK 552
           RT+ +LLEP   +S+ +NYL      K+ + N P K
Sbjct: 279 RTQRVLLEPRIDNSKFINYLIEENYSKRLEFNFPHK 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,234
Number of Sequences: 5004
Number of extensions: 43912
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)