Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021768X
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    30   1.5  
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     30   1.5  
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009           29   3.5  
05_03_0364 + 13007002-13007538,13007965-13008393,13008649-130089...    29   3.5  

>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 39  VVDRSTQFNNVFREVSFKLTVWCVAGRCGV 128
           +++R T+F N+ R  SF  TV     +CG+
Sbjct: 182 LIERCTEFTNILRSASFTKTVRLYGEKCGL 211


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 164 LASGEAAASRIAHAAPTCHTPHRQLK*HFAENIIKLCTSIDYSNRLLMPQHWR 6
           LASG  AA+    + PTC  P  + K  F      +C+ + Y +R     HW+
Sbjct: 292 LASGAGAAALRMCSQPTCGRPETR-KHEFRR--CSVCSGVIYCSRACQAMHWK 341


>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
          Length = 431

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -3

Query: 473 TGSSRSVRVRCSAGPGPAAVASHVCRSGSNFRCLLLQNFDVLRTVYXVVLSVMHPRRLAA 294
           T ++ +     SA   P+A++S +   G +FR + ++    L   Y    SV+ PR LAA
Sbjct: 135 TATTTTTTTSSSATSPPSALSSPLSSIGGSFRAMQIRK---LSGCYLHCHSVLDPRTLAA 191

Query: 293 V 291
           V
Sbjct: 192 V 192


>05_03_0364 +
           13007002-13007538,13007965-13008393,13008649-13008990,
           13009904-13010035,13010432-13010596
          Length = 534

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 311 PRRLAAVPPVATHRLLSAHVLMFLNILLKSYKTVTPRWTRALRLD-ELLILASGEAAASR 135
           P   A + P     +L   +L+FL    K    V P W R   L   L+I A G+   SR
Sbjct: 160 PSEEALIVPTNKSLVLQDSMLLFLTCPSKVPLEVVPIWIRIYDLPLALMIKARGQLYGSR 219

Query: 134 IAH 126
             H
Sbjct: 220 FGH 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,998,276
Number of Sequences: 37544
Number of extensions: 320229
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)