Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021768X
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    32   0.29 
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.2  
SB_7911| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_38664| Best HMM Match : HC2 (HMM E-Value=0.95)                      28   6.2  
SB_21755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 42  VDRSTQFNNVFREVSFKLTVWCVAGRCGVRDSTRCSFSRSQDQQFIKSQSSRPSG 206
           V+  T +   +      L +WC  GR GVR   R  +    +Q   +S ++R  G
Sbjct: 309 VEAETMYRLRYANTGHSLLLWCFTGRSGVRCPVRPHYRHGCEQLLFRSCNTRTLG 363


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 166 INNSSSRRALVHLGVT--VLYDFSKIFRNISTCAESSRCVATGGTAASRRGCMTLNTTXY 339
           I++S+ R  +V  G +  V +DFSK   +    +  S     GG  A+ +G  T NT  +
Sbjct: 361 ISSSAYRVGVVIFGSSAKVAFDFSKFSSSAEIESGLSEIKLIGGATAAGQGLTTCNTALF 420

Query: 340 TVRRTS 357
           +  R+S
Sbjct: 421 SKARSS 426


>SB_7911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -3

Query: 353 VLRTVYXVVLSVMHPRRLAAVPPVATHRLLSAHVLMFLNILLKSYKTVTPRWTRALRLDE 174
           V R V+ V + ++   R+ +V     + LL     +FL++L+K   +  P W RAL L+ 
Sbjct: 242 VERPVFPVAMRLL---RIVSVLIEQFYTLLVTECEIFLSLLVKFLDSGKPLWQRALALEV 298

Query: 173 L 171
           L
Sbjct: 299 L 299


>SB_38664| Best HMM Match : HC2 (HMM E-Value=0.95)
          Length = 210

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 123 GVRDSTRCSFSRSQDQQFIKSQSSRPSG 206
           G R+S+R S SRS  +   +S SSR SG
Sbjct: 29  GRRESSRSSSSRSSSRSVSRSSSSRGSG 56


>SB_21755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 371 LLQNFDVLRTVYXVVLSVMHPRRLAAVPPV-ATHRLLSAHVLMFLNIL 231
           LL     L T Y  +L++  P  L  +  V ATH LL  H +   NIL
Sbjct: 75  LLAKHSALLTTYPTLLTI-RPALLTTLTTVLATHTLLGKHAVAVSNIL 121


>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -3

Query: 356 DVLRTVYXVVLSVMHPRRLAAVPPVATH----RLLSAHVLMFLNILLKSYKTVTPRWTRA 189
           D +RT +  +LSV H  R  A+P +  H     + S+  L+ L   L+S +     +   
Sbjct: 633 DAIRTTHKPLLSVSHLIRACAMPYLGRHDNKNGISSSTALLLLKSSLESIQPDMAAYGSF 692

Query: 188 LRLDELLIL 162
           L+LD + I+
Sbjct: 693 LQLDLIPII 701


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,561,548
Number of Sequences: 59808
Number of extensions: 374846
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)