Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021768X
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    28   5.4  
U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.5 protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 330 CVKRHAPSTAGGRSSCGNTPTTLRARTDVSEYLAK 226
           CV  HA  + GG+ S  N    +R+     EY+AK
Sbjct: 11  CVGAHAQFSEGGKQSMVNAHNAVRSSIAKGEYVAK 45


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
            protein H02F09.3 protein.
          Length = 1275

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 24/108 (22%), Positives = 44/108 (40%)
 Frame = +1

Query: 22   ISNRLE*SIEVHSLIMFSAKCHLS*RCGVWQVGXXXXXXXXXXSPEARINNSSSRRALVH 201
            +S   E ++   S +  S+   +S   G    G          + E+ I  SS     V 
Sbjct: 1096 VSGSTESTVTAESTVSGSSVSTVSGNTGSTITGESTVSGSTGSTGESTILESSVSTVSVS 1155

Query: 202  LGVTVLYDFSKIFRNISTCAESSRCVATGGTAASRRGCMTLNTTXYTV 345
             G T+    +    ++ST + S+    +GG++AS     T ++T  T+
Sbjct: 1156 TGSTITDGSTASRSSVSTVSASTESTVSGGSSASIGSTNTPDSTESTI 1203


>U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical
           protein F18F11.4 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 142 RVESRTPHRPATHHTVNLND 83
           R+ S TPH+P  H T  LND
Sbjct: 149 RLSSVTPHQPYIHLTTELND 168


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 173 IHQVAELSSIWALPFYMTLA 232
           +H V  L ++W++PF +TLA
Sbjct: 48  VHSVPYLQNMWSVPFQVTLA 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,414,071
Number of Sequences: 27780
Number of extensions: 266452
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)