Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021768X
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.7  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 58  CVLLSTTLTDYLCHNTG 8
           C+L S T     CHN G
Sbjct: 159 CILKSITCALQFCHNAG 175


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 275 VLPQEERPPAVEG 313
           V PQEERP  + G
Sbjct: 219 VSPQEERPKGING 231


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 275 VLPQEERPPAVEG 313
           V PQEERP  + G
Sbjct: 214 VSPQEERPKGING 226


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 293 VPPVATHRLLSAHVLMFLNILLKSYKTVTPRW 198
           VPP++       H  M L  L  SY    P W
Sbjct: 391 VPPISGSATPVFHQEMALYYLKPSYDAQEPAW 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,010
Number of Sequences: 438
Number of extensions: 3158
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)