Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021768X
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39240.1 68417.m05555 kelch repeat-containing F-box family pr...    32   0.24 
At2g37930.1 68415.m04656 expressed protein                             28   5.1  
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    27   6.7  

>At4g39240.1 68417.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 375

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 338 YXVVLSVMHP--RRLAAVPPVATHRLLSAHVLMFLNILLKSYKTVTPRW 198
           Y  V+S++    RRL A P +   R L       L ++L+S+ T TPRW
Sbjct: 53  YYPVISLVSKTFRRLIASPEIYVERSLLRRTERVLYVVLRSHATETPRW 101


>At2g37930.1 68415.m04656 expressed protein
          Length = 467

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +1

Query: 220 YDFSKIFRNISTCAESSRCVATGGTAASRRGCMTLNTTXYTVRRTSKFCSNRHRK 384
           + FS++ R+ S+  ESS  +++   A+++ G +T   + YT   T +  SN H +
Sbjct: 116 FSFSQMSRSFSS-KESSSSLSSTSHASAKSGPLTFTNSVYTTHST-RTKSNGHNR 168


>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
            (ZZ type) family protein contains Pfam profiles PF02135:
            TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 395  SGSNFRCLLLQNFDVLRTVYXVVLSVMHPRRLAAVPPVA 279
            SG  +RC +  ++DV    Y     + HP +L   P +A
Sbjct: 1542 SGLGWRCEVCPDYDVCNACYKKEGCINHPHKLTTHPSLA 1580


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,080
Number of Sequences: 28952
Number of extensions: 237743
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)