Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021767
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    43   3e-05
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    26   5.4  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   7.1  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   9.4  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 25/30 (83%)
 Frame = +2

Query: 557 MGSLNVNRNVSDAFYRYKMPRICANVQGKG 646
           M ++N+ R+V D+FYRY+MP++ + ++GKG
Sbjct: 1   MATINIRRDVKDSFYRYRMPKLQSKIEGKG 30


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 236 LLKSYKTVTPRWTRALRLDELLILASGEAAASRIAHAAPTCHTPHR 99
           LL+ YK+  PRW    R+D   ++ +GE  A  +  A       HR
Sbjct: 239 LLQDYKSTFPRWK---RMDLHKVVPNGEEDAIELLSAMLVYDPAHR 281


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 242 NILLKSYKTVTPRWTRAL-RLDELLILASGEAAASRIAHAAPTCHT 108
           +I ++ + +V PR   A   LD+L+   + ++  SRI+ A   C+T
Sbjct: 245 SIHMRQFPSVLPRRPDAFPALDQLIQKMTAKSMNSRISSATDLCYT 290


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 73  TLLNCVLLSTTLTDYLCHNSWR 8
           TLL C+  +  L  +L HN+W+
Sbjct: 127 TLLTCLAFAIELVLFLPHNTWQ 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,256
Number of Sequences: 5004
Number of extensions: 53384
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)