Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021767
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0462 + 9583558-9584910                                           36   0.028
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009           31   1.0  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    30   1.8  
11_06_0416 + 23307984-23308281,23310083-23310900                       28   5.6  
05_03_0364 + 13007002-13007538,13007965-13008393,13008649-130089...    28   5.6  
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638...    28   7.4  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     27   9.7  
05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022     27   9.7  

>09_02_0462 + 9583558-9584910
          Length = 450

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 581 NVSDAFYRYKMPRICANVQGKG 646
           N  DAFYRYKMPR+   ++G+G
Sbjct: 10  NRDDAFYRYKMPRMITKIEGRG 31


>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
          Length = 431

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -1

Query: 476 TGSSRSVRVRCSAGPGPAAVASHVCRSGSNFRCLLLQNFDVLRTVYLVVLSVMHPRRLAA 297
           T ++ +     SA   P+A++S +   G +FR + ++    L   YL   SV+ PR LAA
Sbjct: 135 TATTTTTTTSSSATSPPSALSSPLSSIGGSFRAMQIRK---LSGCYLHCHSVLDPRTLAA 191

Query: 296 V 294
           V
Sbjct: 192 V 192


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 42  VVDRSTQFNNVFREVSFKLTVWCVAGRCGV 131
           +++R T+F N+ R  SF  TV     +CG+
Sbjct: 182 LIERCTEFTNILRSASFTKTVRLYGEKCGL 211


>11_06_0416 + 23307984-23308281,23310083-23310900
          Length = 371

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 646 PLPLDVGAYPRHLVPVERIGDVTVHV*GTHF 554
           PLP D+GA+   L+      DV +HV G  F
Sbjct: 182 PLPSDIGAHLGRLLAAGHGADVAIHVGGETF 212


>05_03_0364 +
           13007002-13007538,13007965-13008393,13008649-13008990,
           13009904-13010035,13010432-13010596
          Length = 534

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = -1

Query: 338 LVVLSVMHPR--RLAAVPPVATHRLLSAHSLMFLNILLKSYKTVTPRWTRALRLD-ELLI 168
           ++   + HP+    A + P     +L    L+FL    K    V P W R   L   L+I
Sbjct: 150 IIKAMITHPKPSEEALIVPTNKSLVLQDSMLLFLTCPSKVPLEVVPIWIRIYDLPLALMI 209

Query: 167 LASGEAAASRIAH 129
            A G+   SR  H
Sbjct: 210 KARGQLYGSRFGH 222


>05_03_0609 -
           16161801-16162848,16163525-16163682,16163806-16163835,
           16164242-16164323,16164599-16164672
          Length = 463

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 303 GGRSSCGNTPTTLRAQSDVSEYLAK 229
           GG S+C +T TT+  QSDV   L K
Sbjct: 282 GGLSACESTTTTINNQSDVVSTLHK 306


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 289 GGTAASRRGCMTLNTTRYTVRRTSKFCSNRHR 384
           GG    R  C  + TTR+++ + +++C+  HR
Sbjct: 175 GGFEIGRVFCFRVETTRWSLEQLNRWCAALHR 206


>05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022
          Length = 496

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 621 IRGILYR*NASETLRFTFKEPILDGLLGFVCFLYLHVI 508
           +RG+L   N S  L  T +   L+G+LGFV    +H++
Sbjct: 210 VRGVLIT-NPSNPLGTTARREALEGILGFVARNDIHLV 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,686,144
Number of Sequences: 37544
Number of extensions: 391449
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)