Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021767
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 32 0.35
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_37531| Best HMM Match : zf-B_box (HMM E-Value=2.4) 30 1.9
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_38664| Best HMM Match : HC2 (HMM E-Value=0.95) 28 7.5
SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_21755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_7911| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 557 MGSLNVNRNVSDAFYRYKMPRICANVQGKG 646
M +NVNR D FYRYKMP++ A V+GKG
Sbjct: 1 MALVNVNRKNMDQFYRYKMPKLIAKVEGKG 30
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 45 VDRSTQFNNVFREVSFKLTVWCVAGRCGVRDSTRCSFSRSQDQQFIKSQSSRPSG 209
V+ T + + L +WC GR GVR R + +Q +S ++R G
Sbjct: 309 VEAETMYRLRYANTGHSLLLWCFTGRSGVRCPVRPHYRHGCEQLLFRSCNTRTLG 363
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 169 INNSSSRRALVHLGVT--VLYDFSKIFRNIRLCAESSRCVATGGTAASRRGCMTLNTTRY 342
I++S+ R +V G + V +DFSK + + + S GG A+ +G T NT +
Sbjct: 361 ISSSAYRVGVVIFGSSAKVAFDFSKFSSSAEIESGLSEIKLIGGATAAGQGLTTCNTALF 420
Query: 343 TVRRTS 360
+ R+S
Sbjct: 421 SKARSS 426
>SB_37531| Best HMM Match : zf-B_box (HMM E-Value=2.4)
Length = 63
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 458 HSCSNQCKYQVKIVNYLITCK 520
H+C +CKYQ + N TCK
Sbjct: 17 HTCETRCKYQAQYDNRYFTCK 37
>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 458 HSCSNQCKYQVKIVNYLITCK 520
H+C +CKYQ + N TCK
Sbjct: 346 HTCETRCKYQAQYDNRYFTCK 366
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 176 LLILASGE--AAASRIAHAAPTCHTPHRQLK*HFAENIIKLCTSIDYSNRLLMPQQL 12
LL+L SG A+ ++HA+ T T HR A C ++ SN+ L Q L
Sbjct: 3435 LLVLGSGRLFGPAAAMSHASTTSSTQHRMAIESAAIRFFCKCITMHPSNQQLFAQLL 3491
>SB_38664| Best HMM Match : HC2 (HMM E-Value=0.95)
Length = 210
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 126 GVRDSTRCSFSRSQDQQFIKSQSSRPSG 209
G R+S+R S SRS + +S SSR SG
Sbjct: 29 GRRESSRSSSSRSSSRSVSRSSSSRGSG 56
>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -1
Query: 359 DVLRTVYLVVLSVMHPRRLAAVPPVATH----RLLSAHSLMFLNILLKSYKTVTPRWTRA 192
D +RT + +LSV H R A+P + H + S+ +L+ L L+S + +
Sbjct: 633 DAIRTTHKPLLSVSHLIRACAMPYLGRHDNKNGISSSTALLLLKSSLESIQPDMAAYGSF 692
Query: 191 LRLDELLIL 165
L+LD + I+
Sbjct: 693 LQLDLIPII 701
>SB_21755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 374 LLQNFDVLRTVYLVVLSVMHPRRLAAVPPV-ATHRLLSAHSLMFLNIL 234
LL L T Y +L++ P L + V ATH LL H++ NIL
Sbjct: 75 LLAKHSALLTTYPTLLTI-RPALLTTLTTVLATHTLLGKHAVAVSNIL 121
>SB_7911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -1
Query: 356 VLRTVYLVVLSVMHPRRLAAVPPVATHRLLSAHSLMFLNILLKSYKTVTPRWTRALRLDE 177
V R V+ V + ++ R+ +V + LL +FL++L+K + P W RAL L+
Sbjct: 242 VERPVFPVAMRLL---RIVSVLIEQFYTLLVTECEIFLSLLVKFLDSGKPLWQRALALEV 298
Query: 176 L 174
L
Sbjct: 299 L 299
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,576,534
Number of Sequences: 59808
Number of extensions: 458137
Number of successful extensions: 1826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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