Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021767
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36730.1 68414.m04569 eukaryotic translation initiation facto...    36   0.023
At1g77840.1 68414.m09070 eukaryotic translation initiation facto...    35   0.041
At4g39240.1 68417.m05555 kelch repeat-containing F-box family pr...    33   0.22 
At5g14430.2 68418.m01689 dehydration-responsive protein-related ...    28   4.7  
At5g14430.1 68418.m01688 dehydration-responsive protein-related ...    28   4.7  

>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 439

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 581 NVSDAFYRYKMPRICANVQGKG 646
           N  DAFYRYKMPR+   ++G+G
Sbjct: 10  NRDDAFYRYKMPRMMTKIEGRG 31


>At1g77840.1 68414.m09070 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 437

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 581 NVSDAFYRYKMPRICANVQGKG 646
           N +DAFYRYKMP++    +GKG
Sbjct: 10  NRNDAFYRYKMPKMVTKTEGKG 31


>At4g39240.1 68417.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 375

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 341 YLVVLSVMHP--RRLAAVPPVATHRLLSAHSLMFLNILLKSYKTVTPRW 201
           Y  V+S++    RRL A P +   R L   +   L ++L+S+ T TPRW
Sbjct: 53  YYPVISLVSKTFRRLIASPEIYVERSLLRRTERVLYVVLRSHATETPRW 101


>At5g14430.2 68418.m01689 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 612

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +1

Query: 205 LGVTVLYDFSKIFRNIRLCAE---SSRCVATGGTAASRRGCMTLNTTRYTVRRTSKFCSN 375
           LG+T LY  S      R   E   S+  V TG   + R   + L  +R+ V ++   C +
Sbjct: 27  LGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTG-IGSLRNRDIVLAVSRFEVPKSVPICDS 85

Query: 376 RHRKLLP 396
           RH +L+P
Sbjct: 86  RHSELIP 92


>At5g14430.1 68418.m01688 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 612

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +1

Query: 205 LGVTVLYDFSKIFRNIRLCAE---SSRCVATGGTAASRRGCMTLNTTRYTVRRTSKFCSN 375
           LG+T LY  S      R   E   S+  V TG   + R   + L  +R+ V ++   C +
Sbjct: 27  LGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTG-IGSLRNRDIVLAVSRFEVPKSVPICDS 85

Query: 376 RHRKLLP 396
           RH +L+P
Sbjct: 86  RHSELIP 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,470
Number of Sequences: 28952
Number of extensions: 291051
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)