Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021766
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 30 0.39
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 28 1.6
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 3.6
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 3.6
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 26 6.4
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 26 6.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 8.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 8.4
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 8.4
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 25 8.4
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 8.4
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 31 LSKVVIIQYSCYSLHYF*TITRNFIYS 111
L++ +I+ YS S+H T+TR FIYS
Sbjct: 529 LNRRLILHYSFESVHQLKTLTRKFIYS 555
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 170 FGSAENRRSPF-SIFDTNPRILT 235
+G N +SPF IF TNPRIL+
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILS 202
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 53 NIVVIHYTISKQ*REILYTALIKINCFFYNSHTVSP 160
N+ +HY K+ L LI NCF YNSH P
Sbjct: 352 NLKNLHYNSKKEFVHDLM--LIWSNCFLYNSHPDHP 385
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = -1
Query: 677 PDVSEHMCS--ASGR-SYNRSYVSTIAAISGLV-LVQRISTRVSSSVPIPSMQRCSSWHR 510
P + ++C A GR +N I G++ V +IS + S+ + SW +
Sbjct: 214 PSQNVYVCGIGAGGRIGFNTDVQYNFIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGK 273
Query: 509 SPQGESSEPRLHLRSDHPIQ 450
+ GE L+ D PIQ
Sbjct: 274 NGSGELGLSNDELKKDDPIQ 293
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 532 NGAAPG--TGLLRGSHQSHDYIFEVTTQF 452
NGAAP + ++RG H DYI+ + T +
Sbjct: 171 NGAAPPDLSCVVRGRHGGQDYIYSLLTGY 199
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +2
Query: 428 DLIEDLKSELGGHFEDVIVALMTPPEETCARSCTVAW 538
D++ D + H D+ + + A+ CTVAW
Sbjct: 35 DIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAW 71
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 8.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 523 LHRCMEGMGTDEDTLVEILCTRTKPEIA---AIVDTYERLYDRPLAEHMCSET-SGDFRR 690
LH + + T+ LV + K E+ AI+D +YD+ A+H ET S D +
Sbjct: 804 LHESLRSVQTENSELVTEMAL-LKAELVKKQAIIDANANIYDKLTADHTNYETVSADINQ 862
Query: 691 LL 696
L
Sbjct: 863 NL 864
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.4
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -1
Query: 713 PTTMS--VRRRRKSPDVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIP 540
PT+ S + SP S + S + S+ ST+++ S S+ SSS P
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPAS 395
Query: 539 SMQRCSSWHRSPQGESSE 486
S SS SS+
Sbjct: 396 SSSHSSSLSSHKSSSSSK 413
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 574 ILCTRTKPEIAAIVDTYERLYD 639
+ CTR + E A VD YE+L D
Sbjct: 2156 LYCTRVQKERFASVDEYEKLKD 2177
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 674 DVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIPSM 534
D+ S+S S S S+ + +S L + VSS+ IPS+
Sbjct: 107 DIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSI 153
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 420 YSRVKACEYGLPLHVGPGSQYINDRLLV 337
+ +V +C Y +P + PG+Q + R++V
Sbjct: 240 FKKVNSCVYVMPDFLSPGAQSLIRRMIV 267
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 447 FRSSMRSLPYSRVKACEYGLPLHVGPGSQ 361
+R +RS+ ++R + L LH PG+Q
Sbjct: 254 WRYLLRSIEWAREQGLRVNLDLHAAPGNQ 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,401
Number of Sequences: 5004
Number of extensions: 64164
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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