Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021765
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           26   0.27 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.62 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.5  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   7.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 443 AIAEIHTKAMGANPPLQPREQLRSTTPWRRPGSSYKRPN----SVTRPSRAA 586
           A  EI  +  G    + PRE+ R+T   RR      RPN     VTRP+  A
Sbjct: 297 AAQEIPGQNPGEKTNIAPRERPRATDHQRRNEPKRPRPNIDRHEVTRPAAPA 348


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 464 KAMGANPP---LQPREQLRSTTPWRRPGSSYKRPNSVTRPS 577
           K+   +PP     P + ++  TP+  PG +Y   ++V  P+
Sbjct: 274 KSASLSPPPHVYNPPDHIQQATPYSAPGPTYSTWSTVQTPT 314


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 459 TPRRWGPTRPCSRESSSGPRRHGVGQAAA 545
           T  RWG  R  S  +  GPR    G+AAA
Sbjct: 51  TTPRWGCARASSATTMGGPR---YGRAAA 76


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 357 KVLESSSLGHITAAAK*ASPLAGCPGCIVSPGPS*DN 247
           K  E ++L     AA  ASP +G P  ++SP P  D+
Sbjct: 294 KAQEEANLYAAKKAAG-ASPYSGTPTPMMSPAPPQDS 329


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 462 VCISAMALSPSTHSWRARASVALSF 388
           +C+ A AL  STH   A+    L F
Sbjct: 5   LCLLASALLISTHQTEAKTDKILCF 29


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 518 SWTGAALSAAGAGWPPSP 465
           S+TG  L +  A  PPSP
Sbjct: 83  SYTGYHLGSYAANCPPSP 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,793
Number of Sequences: 336
Number of extensions: 3507
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)