Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021765
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    36   0.004
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   3.6  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   4.7  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.2  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 156 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYYLMMD 263
           +SG L K+TN   G++ RWF ++   GVLSYY   D
Sbjct: 257 MSGYLKKWTNYKSGYKLRWFTLN--NGVLSYYKNQD 290


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 311  LAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEW 427
            L  + I  S ED+    ++C S  M KLR+T     + W
Sbjct: 1489 LVQSAIRESSEDAIALAVDCDSEAMEKLRSTTTLDEESW 1527


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +1

Query: 514 HDAMASARQQLQATELSDAALARCIESSDSPFPHTDPDLLLLKATSAASMQCLLQCLGVL 693
           H +   + + L+  ELS       + +S  P  + D  +LLL     A   C+L+     
Sbjct: 621 HPSTKRSHKMLEGKELSQELEDLSLHNSPDPIIYKDELVLLLPPREIAKQLCILEFQSFS 680

Query: 694 H 696
           H
Sbjct: 681 H 681


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 236 CSILLSYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARA 415
           C  LL Y     T  P     G  +L  AV       +K FTIN  +G    L A D  +
Sbjct: 194 CRGLLFYSKSQSTSVPS----GIINLTDAVSIEPGTGNK-FTINFNNGKSETLEALDPES 248

Query: 416 RQEWVDGLR-AIAE 454
           +  W+  L+ AIA+
Sbjct: 249 KNTWITDLKNAIAK 262


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 125 HFHTSL-LRLILFIYFRS-FCNNCSHLSPVA*YHIKHHQVL 9
           H HTSL   L++  Y ++ FC +  HL P+  +    H  L
Sbjct: 7   HCHTSLHSELVILFYAKNRFCISIDHLRPLKSHRTHGHYCL 47


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 326 ICPSDEDSKTFTINCASGDML 388
           +CPS   S  F++NC +G M+
Sbjct: 62  LCPSLVGSMAFSMNCGAGGMV 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,128
Number of Sequences: 5004
Number of extensions: 54581
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)