Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021765
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)                39   0.004
SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)                     33   0.18 
SB_10879| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           30   1.6  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)                 29   5.0  
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)                 28   6.6  
SB_38362| Best HMM Match : BRCT (HMM E-Value=0)                        28   6.6  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    28   8.8  

>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
          Length = 926

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 120 KMMKTGLTSHRPLSGQLYKYTNVVKGWQQRWFAVDPETGVLSYY 251
           K M  G        G L K+TN +KG+Q+RWF +    G+LSYY
Sbjct: 304 KNMPDGRVCPDHFRGWLLKWTNYIKGYQRRWFVL--SNGLLSYY 345



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 296 RGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGL 439
           RG  +LA A I    ED+ +F I+     +  LRA+    RQ WV  L
Sbjct: 356 RGTINLAGAFI--DTEDACSFVISNGGTQVFHLRASTEVERQRWVTAL 401


>SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)
          Length = 369

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 162 GQLYKYTNVVKGWQQRWFAVDPETGVLSYYLMMD 263
           G L+K  ++ K W+ RWF +D +   L YY   D
Sbjct: 214 GYLHKRGHLFKQWKSRWFVLDTQRNQLRYYETRD 247


>SB_10879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 323  LLRLNEPPPWPAVQAVLCLLVHHKIIR*NTSLRI 222
            LLR++  P WPA+   LC+L  H I+R  T  ++
Sbjct: 940  LLRISNRPEWPALLHNLCML--HSIVRLRTRFKL 971


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +2

Query: 320 AVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAEIHTKA 469
           A +C   E  K + ++C   +M KL +   + +  W+DG+R +A++ +++
Sbjct: 438 AKLCNRSEKRKGYWLDCVR-EMAKLCSRSEKRKGYWLDGVREMAKLCSRS 486


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +2

Query: 320  AVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAEIHTKA 469
            A +C   E  K + ++C   +M KL +   + +  W+DG+R +A++ +++
Sbjct: 5263 AKLCNRSEKRKGYWLDCVR-EMAKLCSKSEKRKGYWLDGVREMAKLCSRS 5311


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 153  PLSGQLYKYTNVVKGWQQRWFAVDPETGVLSYYLMMDQETQ 275
            P +G +Y   ++V+G   + F ++P TG +   + +D ETQ
Sbjct: 1004 PETGMMY---SIVRGNSPQVFDINPNTGAIQTLMKLDYETQ 1041


>SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)
          Length = 911

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 434 GLRAIAEIHTKAMGANPPLQPREQLRSTTPWRRPGSSYKRPNS 562
           G     + H  A G NPP++P       T  R P ++ + P S
Sbjct: 718 GAERATDPHAAADGGNPPVRPPLAAAQQTKERAPATALRAPGS 760


>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
          Length = 988

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 434  GLRAIAEIHTKAMGANPPLQPREQLRSTTPWRRPGSSYKRPNS 562
            G    A+ HT A G  PP +P       T  R P ++ + P S
Sbjct: 940  GAERAADPHTAADGGTPPTRPPLAAAQQTKERVPATALRAPGS 982


>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -1

Query: 484  RVGPHRLGVYLSNGPEPVDPLLARAGVGSSQLQHVAGRAVYGEGLGVFIAWAYHCCG*MS 305
            R  PH  GV ++ G +P + L   A     +L H    A   + LG F  W+   C   S
Sbjct: 1404 REAPHEWGVEVA-GEQP-NKLATAAKRWRCRLAHQRKTADPSQSLGAFTGWSVFLCVDKS 1461

Query: 304  LPPG 293
              PG
Sbjct: 1462 RQPG 1465


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +2

Query: 389  KLRATDARARQEWVDGLRAIAEIHTKAMGANPPLQPREQLRSTTPWRRPGSSYKRPNSVT 568
            +LRA + RAR   +      + +H        P QP     ++ P ++P  + ++P    
Sbjct: 1039 QLRAAELRARASHMSPSTPTSTVHNAPQAHAVPQQPGTPQPASQPQQKPSPTIQQPPQQG 1098

Query: 569  RPSR 580
            +P++
Sbjct: 1099 QPAQ 1102


>SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 180 TNVVKGWQQRWFAVDPETGVLSYYLMM 260
           TN+V    + W+  DP TG L  Y  +
Sbjct: 492 TNIVTSVDKSWYPTDPNTGHLENYFFL 518


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 180 TNVVKGWQQRWFAVDPETGVLSYY 251
           T V K W++RWF +D     L+Y+
Sbjct: 495 TEVRKNWKKRWFVLDFTKKYLAYF 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,764,880
Number of Sequences: 59808
Number of extensions: 464027
Number of successful extensions: 1527
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)