Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021765
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol bin... 39 0.004
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 38 0.007
Z79754-5|CAB02094.2| 573|Caenorhabditis elegans Hypothetical pr... 35 0.051
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 2.5
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 2.5
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 2.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 4.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.4
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 29 4.4
Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical pr... 28 5.8
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 5.8
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 5.8
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 5.8
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 28 5.8
>AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol
binding protein (osbp)related protein 4, isoform a
protein.
Length = 676
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 156 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYY 251
+ G L K+TN+V GWQ RWF ++ +T L YY
Sbjct: 1 MEGPLSKWTNMVHGWQYRWFKIENDT--LLYY 30
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 296 RGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWV 430
RG+ L AV+ E++ FTI G ++ D R R +WV
Sbjct: 42 RGQIRLTGAVVGIDGENNSLFTIT-VEGKTFHMQGRDLRERNQWV 85
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 159 SGQLYKYTNVVKGWQQRWFAVDPETGVLSYY 251
+G L K+TN +KG++QRWF +D LSYY
Sbjct: 64 AGWLNKWTNYLKGYRQRWFVLD-SNATLSYY 93
>Z79754-5|CAB02094.2| 573|Caenorhabditis elegans Hypothetical
protein F25H2.6 protein.
Length = 573
Score = 35.1 bits (77), Expect = 0.051
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 153 PLSGQLYKYTNVVKGWQQRWFAVDPETGVLSYYL 254
P +G + K+TN V GWQ R+F + G L YYL
Sbjct: 8 PTNGVMKKWTNYVNGWQDRYFEI--TEGNLVYYL 39
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 396 ELPTPARARSGSTGSGPLLRYTP 464
E P PA+ R G+ G GP Y P
Sbjct: 487 ECPNPAKPREGAEGEGPKATYVP 509
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 396 ELPTPARARSGSTGSGPLLRYTP 464
E P PA+ R G+ G GP Y P
Sbjct: 487 ECPNPAKPREGAEGEGPKATYVP 509
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 396 ELPTPARARSGSTGSGPLLRYTP 464
E P PA+ R G+ G GP Y P
Sbjct: 487 ECPNPAKPREGAEGEGPKATYVP 509
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 487 PAAERAAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
P E +AP + + +++ E S+ A IE D P P T
Sbjct: 5304 PVPETSAPTVEPTVEKLKSVESKETSEVQQAEIIEQKDVPVPET 5347
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 487 PAAERAAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
P E +AP + + +++ E S+ A IE D P P T
Sbjct: 5445 PVPETSAPTVEPTVEKLKSVESKETSEVQQAEIIEQKDVPVPET 5488
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 502 AAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
AAP H+ +++ E S+ A +E D P P T
Sbjct: 6196 AAPAHEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPET 6234
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 487 PAAERAAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
P E +AP + + +++ E S+ A IE D P P T
Sbjct: 5304 PVPETSAPTVEPTVEKLKSVESKETSEVQQAEIIEQKDVPVPET 5347
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 487 PAAERAAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
P E +AP + + +++ E S+ A IE D P P T
Sbjct: 5465 PVPETSAPTVEPTVEKLKSVESKETSEVQQAEIIEQKDVPVPET 5508
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 502 AAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
AAP H+ +++ E S+ A +E D P P T
Sbjct: 6216 AAPAHEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPET 6254
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 487 PAAERAAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
P E +AP + + +++ E S+ A IE D P P T
Sbjct: 5304 PVPETSAPTVEPTVEKLKSVESKETSEVQQAEIIEQKDVPVPET 5347
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 487 PAAERAAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
P E +AP + + +++ E S+ A IE D P P T
Sbjct: 5465 PVPETSAPTVEPTVEKLKSVESKETSEVQQAEIIEQKDVPVPET 5508
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 502 AAPVHDAMASARQQLQATELSDAALARCIESSDSPFPHT 618
AAP H+ +++ E S+ A +E D P P T
Sbjct: 6216 AAPAHEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPET 6254
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 456 ISAMALSPSTHSWRARASVALSFNMSPDAQFMVKVLESSSLGHITAAAK*ASPLAGCPGC 277
+ A L+ H R + + M+ A +V +L S++ H+ + A SPLA P C
Sbjct: 197 MDACNLAAQLHVNRLEMHQLVEWRMALIAPNLVALLGSTTTAHLVSQAGGLSPLATMPSC 256
Query: 276 IV 271
V
Sbjct: 257 NV 258
>Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical
protein C09H10.8 protein.
Length = 344
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 495 GCRGGLAPIALVCISAMALSPSTHSWRAR-ASVALSFNMSPDAQFMVKVLESSSLGHITA 319
GC P+ L +++ S S R+R AS L NMSP M +L S+ T
Sbjct: 184 GCASEKTPLRLSITNSIISMASMRSSRSRSASHFLEPNMSPAIAPMCALLGSTESNSTTT 243
Query: 318 AAK*ASPL 295
+ +SP+
Sbjct: 244 TTQPSSPI 251
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 396 ELPTPARARSGSTGSGPLLRYTP 464
E P PA+ R G G GP Y P
Sbjct: 276 ECPNPAKPREGVEGEGPKATYVP 298
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 396 ELPTPARARSGSTGSGPLLRYTP 464
E P PA+ R G G GP Y P
Sbjct: 276 ECPNPAKPREGVEGEGPKATYVP 298
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 396 ELPTPARARSGSTGSGPLLRYTP 464
E P PA+ R G G GP Y P
Sbjct: 276 ECPNPAKPREGVEGEGPKATYVP 298
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 445 HC*DTHQGDGGQPAPAAERAAPVHDAMASARQQLQATELSDAALARCIESSDSP 606
HC TH G GGQ A+ + + + S+R L AA A +E P
Sbjct: 554 HCPFTHHGTGGQQPGGAQLTSEFKNPLTSSR-MLTVPSPFIAATAAAVEELPKP 606
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,052
Number of Sequences: 27780
Number of extensions: 329852
Number of successful extensions: 1187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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