Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021763
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.68
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 27 2.1
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 27 2.7
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 27 3.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.8
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 6.3
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 6.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.3
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 25 8.3
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 8.3
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 292 SERENPTSSGSKDQNEANRTSSQPVPMASSNSSYFSGEPIHFRVRGSTITGASPPQFVT 468
S + +SS S + ++ +SS VP+ SS SS S S+ +S F+T
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFIT 242
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 93 GNFLPINLFLINKLIF----RLCYQLHDSRWFCIK*HEVFDIAPSVLGLI 230
GN P NL + N L F LCYQL+ R ++ H + + A G I
Sbjct: 227 GNTYPENLTIPNALDFLFMPSLCYQLYYPRTAHVRIHYLIECALGTFGCI 276
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 241 ILFAAKLIVIVQKHIVMSERENPTSSGSKDQNEANRTSSQPVPMASSNSSYFSG 402
IL A + ++ K I + E P SS SK + + TSS P ASS + G
Sbjct: 205 ILIGALVFFLMDKGIRILIHERP-SSLSKPKKDGEETSSVNKPSASSTQTDVKG 257
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 226 LYGVRILFAAKLIVIVQKHI-VMSERENPTSSGSKDQN 336
LY V FAA+LI ++ KH+ +S+ E + SK N
Sbjct: 175 LYEVYAPFAAELIQVLSKHLFTLSQNEQASKVYSKGLN 212
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 565 PPDNSYQKLVKETMHRAYFDILREQLNSNPPEYKQALILLEDVK 696
PP Y++L T +Y D+++ Q + P Y + L ++++ K
Sbjct: 172 PPPQEYRQL-NVTDALSYLDLVKLQFHQEPEIYNEFLDIMKEFK 214
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 411 DWFSRKVAAVTRGHRYWLG*GPVRFILVFRTGTSWVLAFTHDDMFL 274
DWF RK++ G+ WL ++ L TG L ++ D FL
Sbjct: 15 DWFQRKISRDIYGNSTWLTGIDLQKELTGHTGCVNTLDWSADGEFL 60
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 692 TSSSNIKACLYSGGLEFSCSL 630
TS++ I LYSG LEF+ +L
Sbjct: 107 TSANTITTTLYSGSLEFTTTL 127
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 275 KNISS*VNARTQLVPVLKTRMKRTGPHPNQYLWPLVTAATFLENQ-STSGSEVPQ 436
K +S V+ ++ +P + TRM GP P + LENQ GS +PQ
Sbjct: 748 KTMSETVSENSKWMPEMPTRMPPPGPSPTMF-------GRSLENQLKIEGSVLPQ 795
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 683 SNIKACLYSGGLEFSCSLKMSKYALCIVSFTNFW*LLSGGSKW 555
++I +Y+ E + +LK+ ++FT F+ L GSKW
Sbjct: 61 ASIPLSVYNQVQELNIALKVQPELFQALAFTTFFQCLYYGSKW 103
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 248 LLQNSLSLCKNISS*VNARTQLVPVLKTRMKRTGPH 355
L + LSL K S V+ART ++ +L T + R G H
Sbjct: 578 LFVHVLSLFKAFES-VDARTSILSLLGTLLARAGEH 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,766
Number of Sequences: 5004
Number of extensions: 68282
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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