Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021763
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42922| Best HMM Match : Tcp11 (HMM E-Value=0)                       61   8e-10
SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_42922| Best HMM Match : Tcp11 (HMM E-Value=0)
          Length = 392

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 23/52 (44%), Positives = 39/52 (75%)
 Frame = +1

Query: 568 PDNSYQKLVKETMHRAYFDILREQLNSNPPEYKQALILLEDVKQGLFSILLP 723
           P+NS +K +++ +H+AY+D L+E L+  PP+Y Q L+L+ D+K+ L  +LLP
Sbjct: 46  PENSMEKQIRDIVHKAYWDKLQEDLDKTPPDYSQMLMLIADLKENLLGLLLP 97


>SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 550 WNHFDPPDNSYQKLVKETMHRAYFDILREQLNS 648
           W H   P   YQ+LV+   H  Y    R  +NS
Sbjct: 157 WGHTQTPSKDYQELVRNLKHPPYSRSPRTDVNS 189


>SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 292 SERENPTSSGSKDQNEANRTSSQPVPMASSNSSYFSGEP 408
           SER+ P   GS      +R +S  VPM   ++S+F G P
Sbjct: 120 SERDPPPGKGSP----GSRPNSSGVPMTMGSNSHFGGGP 154


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 643 LAVLSKCQSTLCALFLSPIFGNCCLEDQNGSNLK 542
           L+ +S+C+  LCA    P+ G  C+ D++ +  K
Sbjct: 16  LSTISECEKELCASKRCPLQGQICVMDKHFNTAK 49


>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 574 NSYQKLVKETMHRAYFDILREQLNSNPPEYKQALILLEDVKQG 702
           N Y KLVK   + A  D + + L+++PP      IL E +++G
Sbjct: 296 NKYDKLVKNFEYAAALDAILQPLSNHPPVV--VAILQELIRRG 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,027,231
Number of Sequences: 59808
Number of extensions: 488126
Number of successful extensions: 1197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)