Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021763
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.96 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   5.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 418 RVRGSTITGASPPQFVTLEDI 480
           R+ GS  T A+PPQ  T E +
Sbjct: 443 RIHGSPATTAAPPQLPTEESV 463


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 307 PTSSGSKDQNEANRTSSQPVPMASSNSSYFSGEPIHFRVRGSTITGAS 450
           P + G KDQ+ A R         S N  +F G P    + G +  GAS
Sbjct: 174 PGNMGLKDQSMALR-------WVSENIEWFGGNPKRITLIGLSAGGAS 214


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 292 SERENPTSSGSKDQNEANRTS 354
           SER    S GS+D++  + TS
Sbjct: 77  SERSKSRSPGSRDRSNTSNTS 97


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 307 PTSSGSKDQNEANRTSSQPVPMASSNSSYFSGEPIHFRVRGSTITGAS 450
           P + G KDQ+ A R         S N  +F G P    + G +  GAS
Sbjct: 45  PGNMGLKDQSMALR-------WVSENIEWFGGNPKRITLIGLSAGGAS 85


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 307 PTSSGSKDQNEANRTSSQPVPMASSNSSYFSGEPIHFRVRGSTITGAS 450
           P + G KDQ+ A R         S N  +F G P    + G +  GAS
Sbjct: 174 PGNMGLKDQSMALR-------WVSENIEWFGGNPKRITLIGLSAGGAS 214


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -1

Query: 722 GNNIEKRPCLTSSSNIKACLYSGGLEFSCSLKMS--KYALCIVSFTNFW 582
           GN    R CLT +  ++A  ++   +  CS  +    +AL       FW
Sbjct: 193 GNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGNLSHALLKDPVKEFW 241


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 389 LLLLEAIGTGWDEVLFASF 333
           +LLL A   GW+E+L ASF
Sbjct: 264 VLLLRA---GWNELLIASF 279


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 389 LLLLEAIGTGWDEVLFASF 333
           +LLL A   GW+E+L ASF
Sbjct: 264 VLLLRA---GWNELLIASF 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,987
Number of Sequences: 438
Number of extensions: 4726
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)