Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021763
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05... 33 0.15
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 32 0.34
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 29 4.1
At5g46690.1 68418.m05753 basic helix-loop-helix (bHLH) family pr... 28 5.5
At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote... 28 5.5
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 28 7.2
At3g28410.1 68416.m03549 F-box family protein low similarity to ... 28 7.2
At1g68390.1 68414.m07813 expressed protein contains Pfam profile... 28 7.2
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi... 28 7.2
At5g16170.1 68418.m01890 expressed protein contains Pfam profile... 27 9.6
At1g50050.1 68414.m05616 pathogenesis-related protein, putative ... 27 9.6
>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1097
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +1
Query: 574 NSYQKLVKETMHRAYFDILREQLNSNPPEYKQALILLEDVKQGLFSI 714
++ Q VKETM +A++D + E + + P++ + L+++V+ L I
Sbjct: 633 SNLQVRVKETMEKAFWDGVMESMKQSQPDFSWVIKLMKEVRDELCEI 679
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 562 DPPDNSYQKLVKETMHRAYFDILREQLNSNPPEYKQALILLEDVKQGL 705
D DN ++ +KETM RA++D + E + P+Y L+++V L
Sbjct: 678 DEEDN-LKRRIKETMERAFWDNVMESMKLEKPDYSCISNLMKEVSDEL 724
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +1
Query: 244 LFAAKLIVIVQKHIVMSERENPTSSGSKDQNEANRTSSQP--VPMASSNSSYFSGEPIHF 417
+FA+ L +V + E + SG+ D NEA+ TS+ +P+ S++++ G+
Sbjct: 925 IFASNLPNLVNATEEGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQVNSM 984
Query: 418 RVRGSTITGASPPQFVTLEDIMKAAH 495
+ G T G++ T++DIM H
Sbjct: 985 SLIG-TAYGSN-----TIDDIMSMGH 1004
>At5g46690.1 68418.m05753 basic helix-loop-helix (bHLH) family
protein contains similarity to bHLH DNA-binding protein
Length = 327
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 274 QKHIVMSERENPTSSGSKDQNEANRTSSQPVPMASSNSSYFSGEPIHFRVRGSTITGASP 453
QKH ++ TSS S+D N QP ++ S S +P GST + +P
Sbjct: 146 QKHHNAKLNQSVTSSTSQDSNGEQENPHQPSSLSLSQFFLHSYDPSQENRNGSTSSVKTP 205
>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
kinase, putative
Length = 935
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 412 HFRVRGSTITGASPPQFVTLEDIM 483
HF + ++ITG PP++ TL +++
Sbjct: 129 HFHMNNNSITGQIPPEYSTLTNVL 152
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting protein
12 (TRIP12) {Homo sapiens}; contains Pfam profiles
PF00632: HECT-domain (ubiquitin-transferase), PF00514:
Armadillo/beta-catenin-like repeat
Length = 1502
Score = 27.9 bits (59), Expect = 7.2
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +1
Query: 190 TKFLILRLQCSALYGVRILFAAKLIVIVQK---HIVMSERENPTSSGSKDQNEANRTSSQ 360
T L LRL+ S+ ILF K + + + H++ ER N G + + R +
Sbjct: 963 THRLALRLKGSSHPPYDILFLLKSLEGMNRFLFHLISLERINAFGEGRLENLDDLRVQVR 1022
Query: 361 PVPMASSNSSYFSGEPIHFRVRGS--TITGASPPQFVTLED 477
PVP + SS + E + ++R S T PP F L D
Sbjct: 1023 PVPHSEFVSSKLT-EKLEQQLRDSFAVSTCGLPPWFNDLMD 1062
>At3g28410.1 68416.m03549 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 465
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 558 MVPT*NRYQQQSRGLKPV-LHSMSSLHNILQCHKLGW*CSCDCGTSDPEVDWFSRKV 391
++P +R Q S GLK + LH++ H+I++ H L C S EV S+++
Sbjct: 336 VIPGISRLLQNSPGLKKLTLHTLQLSHDIMEMHPLKGLYPDQCWRSTCEVFPTSKEI 392
>At1g68390.1 68414.m07813 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function,
DUF266; expression supported by MPSS
Length = 408
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 278 NISS*VNARTQLVPVLKTRMKRTGPHPNQYLWPLVTAATFLENQSTSGSEVPQSQE 445
NI S + R + + GPHPN+++ VT A F+EN + G + +E
Sbjct: 325 NIKSSLKRRNSNRTLTWVDWSKGGPHPNRFIRHEVT-AEFMENLRSGGECLYNGEE 379
>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1322
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 688 LQVILRLVCIQEDWNLAVLSK 626
LQ ILR +C DWN AV K
Sbjct: 5 LQQILRSICSNTDWNYAVFWK 25
>At5g16170.1 68418.m01890 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 411
Score = 27.5 bits (58), Expect = 9.6
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 341 RTGPHPNQYLWPLVT 385
+ GPHP +++WP +T
Sbjct: 342 KAGPHPGRFIWPDIT 356
>At1g50050.1 68414.m05616 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1b precursor
(pr-1b) GB:X03465 GI:19977 from [Nicotiana tabacum];
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 226
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 459 VCDIGGYYEGCSWNAKQAL 515
+C+ GGY+ GC+++A AL
Sbjct: 138 LCNNGGYFVGCNYDASAAL 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,733
Number of Sequences: 28952
Number of extensions: 354190
Number of successful extensions: 1036
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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