Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021762
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 34 0.021
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 33 0.037
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 30 0.26
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.35
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 29 0.46
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.61
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 29 0.81
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 28 1.4
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.5
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 3.3
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 26 4.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 4.3
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 4.3
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 26 5.7
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 5.7
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 5.7
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 7.5
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 9.9
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 9.9
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 33.9 bits (74), Expect = 0.021
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 556 YVCPECNKEFVRRSHVTRHM 615
+VCPEC+K+F R H+ RH+
Sbjct: 423 FVCPECSKKFKRSEHLRRHI 442
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 33.1 bits (72), Expect = 0.037
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 538 IHERALYVCPECNKEFVRRSHVTRHMTQSGCHGRQLNLYPCEICK 672
I + ++ C +C K F R ++TRH CH + + PC C+
Sbjct: 25 IDSKRVFPCDQCAKRFTRHENLTRH---KACHSKAEPI-PCPYCE 65
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 556 YVCPECNKEFVRRSHVTRHM-TQSG 627
Y CP C K F R H TRH+ T +G
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRTHTG 50
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +1
Query: 526 HIETIHERALYVC--PECNKEFVRRSHVTRH 612
HI T +VC P C K F R +TRH
Sbjct: 44 HIRTHTGEKPHVCTFPGCAKRFSRSDELTRH 74
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 29.9 bits (64), Expect = 0.35
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 547 RALYVCPECNKEFVRRSHVTRHMTQSGCHGRQL 645
++ +C C ++F HV +H+TQS H L
Sbjct: 401 KSALICVLCERKFQSWGHVVKHITQSIMHNNNL 433
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.46
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 517 LKEHIETIHERAL-YVCPECNKEFVRRSHVTRHMTQSGCHG 636
LK H+ IHE YVC EC K F R + RH ++ C G
Sbjct: 488 LKRHLR-IHENGRPYVC-ECLKRFNRLDALNRHKQRNICVG 526
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 517 LKEHIETIHERALYVCPECNKEFVRRSHVTRHM 615
++ HI+T Y C C FVR + RH+
Sbjct: 460 VESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHL 492
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 29.1 bits (62), Expect = 0.61
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +1
Query: 520 KEHIETIHERALYVCPECNKEFVRRSHVTRHMTQ 621
+ H + ++CP C+ F R + RH+ Q
Sbjct: 35 RRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQ 68
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 502 SK*TVLKEHIETIHERALYVCPE--CNKEFVRRSHVTRH 612
S+ ++L++H+ T +VC C+K F R+SH+ H
Sbjct: 35 SRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIH 73
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 556 YVCPECNKEFVRRSHVTRHM 615
YVC C + F R H+ RH+
Sbjct: 70 YVCETCTRAFARLEHLKRHI 89
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +1
Query: 520 KEHI---ETIHERA-LYVCPECNKEFVRRSHVTRHMTQ 621
KEH+ E HE + C CN+ F R + RH+ Q
Sbjct: 40 KEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQ 77
Score = 26.2 bits (55), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 565 PECNKEFVRRSHVTRH 612
P+C K F R+ H+ RH
Sbjct: 31 PDCPKSFTRKEHLRRH 46
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 556 YVCPECNKEFVRRSHVTRHM 615
Y CP C + F R+ H RH+
Sbjct: 4 YECPFCKRVFHRQEHQVRHI 23
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 532 ETIHERALYVCPECNKEFVR 591
E I E YVCP+ KEF R
Sbjct: 238 ERIKEECCYVCPDIVKEFSR 257
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 646 LTDDHDSHFVSYD--ELHEIVLQTLCCILDIHIRLFHVLSLCVPSEQFIWTPY 494
L D + S V+ EL+E +L C LDIHI LSL S W +
Sbjct: 36 LKDSYSSPSVAIQLLELNEQAFSSLGCKLDIHIVQHFSLSLFETSVGMNWKSF 88
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 230 QVKQHRSTTDIKQEVNSGQVYVCTICKKSCDEDEWESHVEICRMSSNNKQPYCCKECG 403
++++H +T I Q + Y+ TI +K D D ++C +S N Y C CG
Sbjct: 45 EMEEHETTPIISQNL-----YLDTINRKLLDFD----FEKVCSVSLTNLSVYACLVCG 93
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 252 PQISNKKLILDKFMFVQYVKSPVTRTNGRVTWKSVV 359
P + N + D F F +Y ++P RT+G + ++V
Sbjct: 284 PDLPNVGMERDIFQFQEYFENPAFRTDGLKLYPTLV 319
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 556 YVCPECNKEFVRRSHVTRHMTQSG 627
+ C CN+EF V HM Q G
Sbjct: 259 FTCLTCNREFKSLEAVRAHMQQKG 282
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 604 LHEIVLQTLCCILDIHIRLFHVLSLCVPSEQFI 506
LH ++QTLCC ++ ++H L +C S+ +
Sbjct: 278 LHSRIVQTLCC-FSLNF-IYHGLPICEKSKHIL 308
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 251 TTDIKQEVNSGQVYVCTI---CKKSCDEDEWESHVEICRMSSNNKQ 379
+T +++V + + C I C K C + +W H C+ +KQ
Sbjct: 50 STCTEEKVKTQRCAACKIIHYCSKGCQKADWPFHKLECKALQASKQ 95
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 294 FVQYVKSPVTRTNGRVTWKSVV 359
F +Y K+ + NGR+T+ S++
Sbjct: 492 FYEYAKTAIYENNGRITFSSLL 513
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 517 LKEHIETIHERALYVCPECNKEFVRRSHVTRH 612
LK H+ T + C C K F R+ RH
Sbjct: 587 LKSHMNTHTNYRPFQCSICKKSFARQHDKRRH 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,623
Number of Sequences: 5004
Number of extensions: 62412
Number of successful extensions: 190
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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