Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021762
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54020.1 68418.m06719 expressed protein 31 0.92
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR... 30 1.2
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ... 30 1.6
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami... 30 1.6
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 29 2.8
At5g23610.1 68418.m02770 expressed protein 29 3.7
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ... 29 3.7
At5g43030.1 68418.m05250 DC1 domain-containing protein contains ... 28 4.9
At4g18540.1 68417.m02747 expressed protein ; expression support... 28 4.9
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 28 4.9
At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein ... 28 4.9
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ... 28 6.5
At4g10440.1 68417.m01716 dehydration-responsive family protein s... 27 8.6
>At5g54020.1 68418.m06719 expressed protein
Length = 556
Score = 30.7 bits (66), Expect = 0.92
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Frame = +2
Query: 299 TICKKSCDEDEWESHVEICRMSSNNKQPY-CCKECGXXXXXXX--SHLQHIEM-----NH 454
++C+ S D + +IC ++ Y C ECG L ++++ +
Sbjct: 454 SLCQGSSVNDSGDLWCDICETKTDPSVCYYTCDECGLSLHIDCVLGDLYYLKLGIPEPDV 513
Query: 455 STLPNSVA----CTKCKVRCPNKLF*RNT 529
PN+ A C+ CKVRC N F R+T
Sbjct: 514 EICPNNEATRPLCSGCKVRCKNPFFIRST 542
>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1304
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 496 YFTFCASNTIR*CGVVHFYVLKMT 425
YF FC SN I+ CGV YV + T
Sbjct: 1196 YFKFCCSNRIKECGVRLLYVYQET 1219
>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 556
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +2
Query: 290 YVCTICKKSCDEDEWESHVEICRMSSN-----NKQPYCCKECGXXXXXXXSHLQHIEMNH 454
Y C IC+K D +W + C + + K PY G Q + NH
Sbjct: 451 YWCEICEKPTDPRKWFYSCDKCCSTLHIDCVLGKSPY--MRPGHSFLLCSREFQVVSNNH 508
Query: 455 STLPNSVACTKCKVRC 502
++ P CT C +RC
Sbjct: 509 TSRP---FCTICSLRC 521
>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 1183
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 282 PELTSCLISVVDLCCLTWV--FYSWTLGGDPLSYLYEASSIKFANRVYR 142
PE SCL V +LC WV ++ + D L+ L EA K ++ VYR
Sbjct: 609 PEKYSCLTHVKELCSCPWVTKYFLFRYDIDELNVLVEAVEGKLSS-VYR 656
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +2
Query: 290 YVCTICKKSCDEDEWESHVEICRMSSNNKQPYCCKEC---GXXXXXXXSHLQHIEMNHST 460
Y C +C+K + W IC ++ + + G S L+ + ++ST
Sbjct: 492 YWCELCEKEVNPRNWFYTCNICCITIHLHCIFGSSSYMKPGSIFDYNYSKLEVLRNSNST 551
Query: 461 LPNSVACTKCKVRCPNKLF 517
P CT+C RCP ++
Sbjct: 552 RPQ---CTRCGDRCPGYIY 567
>At5g23610.1 68418.m02770 expressed protein
Length = 359
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -3
Query: 160 CKSCLQNNSLFSLQNETT*TIKKLVGIHFDITFTQAL 50
CKS LQ+ SL SLQ+++ +++ ++ D+ T+++
Sbjct: 248 CKSSLQDQSLISLQDQSLVSLQDQSLVNVDMQMTESM 284
>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 708
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/76 (18%), Positives = 31/76 (40%)
Frame = +2
Query: 290 YVCTICKKSCDEDEWESHVEICRMSSNNKQPYCCKECGXXXXXXXSHLQHIEMNHSTLPN 469
Y C +C+K D +W C ++ + + + + +E+ ++
Sbjct: 605 YWCEVCEKEVDPRDWFYACNKCCITVHLQCVFGSSGYVKPGFTLYHYFTKMEVLSNSKST 664
Query: 470 SVACTKCKVRCPNKLF 517
CT+C RCP+ ++
Sbjct: 665 RPFCTECGQRCPSSVY 680
>At5g43030.1 68418.m05250 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 564
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 649 NLTDDHDSHFVSYDE-LHEIVLQTLCCILDIHIRLFHVLSLC 527
+ T +H+ V+ D+ LH+I Q C+L I ++ +LC
Sbjct: 251 HFTHEHNLRLVNEDDILHDISKQCYGCVLPIFFNSCYICTLC 292
>At4g18540.1 68417.m02747 expressed protein ; expression supported
by MPSS
Length = 520
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 276 LTSCLISVVDLCCLTWVFYSWTLGGDPLSYLY 181
+ S ++S++ L CL W F T+ DP S Y
Sbjct: 272 VASTILSLLCLTCLVWAFVILTVSYDPKSRSY 303
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/30 (26%), Positives = 22/30 (73%)
Frame = -1
Query: 528 VFLQNSLFGHRTLHFVQATLLGNVEWFISM 439
V++ ++ + R + ++ T+LGN+EW++++
Sbjct: 259 VYVTDNSYNSRQILVMEKTILGNLEWYLTV 288
>At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein
(ZAT10) / salt-tolerance zinc finger protein (STZ)
identical to salt-tolerance zinc finger protein
GB:CAA64820 GI:1565227 from [Arabidopsis thaliana];
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA zinc finger protein STZ/ZAT10
(STZ/ZAT10) GI:9965730
Length = 227
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 248 STTDIKQEVNSGQVYVCTICKKSCDEDEWESHVEICRMSSNN 373
+TT SG+ +VCTIC KS + + C NN
Sbjct: 122 ATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYEGNN 163
>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 711
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 523 EHIETIHERALYVCPECNKEFVRRSHVTRHMTQSGCH 633
+H+E +R Y CP CN EF R HV + H
Sbjct: 98 KHLEG--KRYYYFCPLCNLEFHRGCHVLPQQMKHPLH 132
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 278 SGQVYVCTICKKSCDEDEWESHVEICRMSSNNK 376
SGQ Y C IC+ D EW + CR++ + K
Sbjct: 595 SGQ-YWCEICESKLDASEWFYTCDSCRVTLHLK 626
>At4g10440.1 68417.m01716 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 633
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Frame = +2
Query: 245 RSTTDIKQEVNSGQVYVCTICKKSCDEDE----WE---SHVEICRMSSNNKQPYCC 391
R+ D+K+E +S + ++C K E W+ +H+E ++ NNK P C
Sbjct: 330 RTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIWQKPLNHIECKKLKQNNKSPPIC 385
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,172
Number of Sequences: 28952
Number of extensions: 314358
Number of successful extensions: 902
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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