Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021760
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 31 0.15
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 28 1.4
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 1.8
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 27 2.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.4
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 2.4
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 27 2.4
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 3.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.1
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 4.1
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 4.1
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.1
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 4.1
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.5
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 26 5.5
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 5.5
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 25 7.2
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 25 7.2
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 9.5
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.5
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 9.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.5
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 9.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.5
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 407 ETRNSPLKTMTNSPKSQRLTLTPKTSQETPKI 502
ET +SP T+++SP + + L+P +Q+ PKI
Sbjct: 600 ETDSSPSDTISSSPTVRAVNLSPSKNQKPPKI 631
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 329 DIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRH 508
DI N++ +S KP S L++ + S T++PK +L+L+ + I H
Sbjct: 772 DISNALNTSRSENKPNSNLVQGSVVKPSNTSASALPTSAPK--KLSLSEYRQRRQQNILH 829
Query: 509 RQS 517
+QS
Sbjct: 830 QQS 832
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 443 SPKSQRLTLTPKTSQETPKIRHRQSHPK*DHRYHMK*LRTFWIGLHPLLV 592
S RL+LTP ++ TP P + K L+ FW+ + L +
Sbjct: 407 SVAKDRLSLTPSSTPSTPSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSI 456
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 370 TYFTSDRKIKVTRDQKLTSKNHDKLTKI--PEINSHSENFTRNTKNQTSPVTPKVRSPLS 543
++ T+ +++ K T + D ++ P N SEN K T + P+
Sbjct: 288 SFSTTMASADASKETKQTHETKDSKSEESKPSNNEKSENAVEPAKGNTMSFSWTPDKPIK 347
Query: 544 YEIAENILDRPSPLTSRSLRGTLKIK 621
++ E +PL+S+ L + +K
Sbjct: 348 FDTPEKKFTFTNPLSSKKLPASSDVK 373
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 489 SCEVFGVRVNLWDFGEFVMVFRGEFLVSGDFNLSIRGEVGL 367
S E++GV ++ W F E + RG + S D +S +G GL
Sbjct: 335 SGEIYGVLLHRWCFLEIFIKLRGAY-PSNDSGISGKGIFGL 374
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 418 LTSKNHDKLTKIPEINSHSEN-FTRNTK-NQTSPVTPKVRSPLSYEIAENILDRP 576
L KN+D L + E+NS SE F++N S + KV+ + E L P
Sbjct: 195 LIDKNNDDLLSVDELNSLSEKCFSKNLSIEDASEILSKVKEICPEGVYEGQLTLP 249
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +2
Query: 308 SKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQ 487
+KR+ ++ + + IN +P+++ S +SPL T ++S T +P +
Sbjct: 518 TKRKDYEELPEEVSETSINIAEHTPVLKHTSSLLDHHSPLAT-SSSEHEMEATPSPALLK 576
Query: 488 ETPKIRHRQS 517
+T K R S
Sbjct: 577 KTNKRRELPS 586
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 452 ILVSLSWFLEVSFWSLVTLIFLSE 381
+L+ W L V FW++V IF+ E
Sbjct: 69 LLIGAVWGLNVGFWTVVCGIFIGE 92
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 229 LRFVALLPEFILKFSV 182
L++ ALLPE++ KFS+
Sbjct: 236 LKYAALLPEYVAKFSI 251
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 356 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQET 493
P + KP++ + + E RN+ + NSP S + + K++ T
Sbjct: 129 PTDNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATT 174
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 317 RILSDIQNSILSSPINYKPTSPLIERLKSPETR 415
++LS+I I + Y P + +LKSPET+
Sbjct: 276 KVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK 308
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 440 NSPKSQRLTLTPKTSQETPKIRHRQSH 520
+S K+ RL +PK++ +T ++ R+SH
Sbjct: 383 SSSKTARLNSSPKSTLKTSSVKTRRSH 409
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 334 TKLYTQLTN*LQTYFTSDRKIKVTRDQKLTSKNHDKLTKI 453
TK YT + + L T+ D + T +KLTSK +L K+
Sbjct: 210 TKNYTHIFDSLLTFTRHDSEDVSTSVEKLTSKKISELEKL 249
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 433 HDKLTKIPEINSHSENFTRNTKNQTSPVTPKVRSPLSYEIAENI--LDRPSPLTSRSLRG 606
H +PE S NF + + + VTP V P+ E +N+ + +PL SL
Sbjct: 73 HSSSDLLPEQVSEWFNFYQKYRFKRESVTPIVEEPIVPEEPDNLEGVSEETPLKETSLE- 131
Query: 607 TLKIKEVLEVRS 642
L +E++ +S
Sbjct: 132 -LSEEEIITSKS 142
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.5
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +2
Query: 242 ILAQHKKKMYPHSLSFDQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERL----KSPE 409
+LA + M + D S ++ R+L+ + L + +K S LI +L + PE
Sbjct: 344 LLATNSNGMLLLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEPE 403
Query: 410 TRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRHR 511
+RN LK + S K LT + P H+
Sbjct: 404 SRNLLLKNLFFSEKDNVLTYILQDQAVGPSFIHK 437
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 415 KLTSK-NHDKLTKIPEINSHSENFTRNTKNQTSPVTPKVRSPLSYEIAENILDRPSPLTS 591
KLT K L +NS +FTR KN T T R + ++ D+ SP ++
Sbjct: 4 KLTKKLKETHLASAIGLNSGGSSFTRGLKNSTLSSTSS-RKSSDEKSRKSSEDKRSPQST 62
Query: 592 RSLRGTLKIKEVLEVRS 642
G L++ ++E R+
Sbjct: 63 VVQPGLLQV-TIIEARN 78
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 364 LQTYFTSDRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFT 486
LQ YFT+ + ++Q SKN D KI + H F+
Sbjct: 371 LQRYFTALEMQQDQKEQHKKSKNKDPFRKITHPSLHLGKFS 411
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 397 KVTRDQKLTSKNHDKLTKIPEINSHSENFTRNTKNQTSPVTPKVRSPLS--YEIAENI-L 567
K+T D+K +S N T SEN +++N +P T K + E E +
Sbjct: 7 KLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGF 66
Query: 568 DRPSPLTSRSLRGTLKIKEVL 630
P+P+ ++ L ++V+
Sbjct: 67 KTPTPIQQEAIPVVLNKRDVI 87
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 427 KNHDKLTKIPEINSHSENFTRNTKNQTSPVTPKVRSPLSYEIAENILDRPSPLTSRSLRG 606
KN+ L + +S +N T T+N + VR P +Y + + + +PL +
Sbjct: 320 KNYLGLNVVQNDDSRKKNSTLQTQNMRFKSSYGVRGPRNYSSFDALPSKNAPLVRQEQSA 379
Query: 607 TLK 615
+ K
Sbjct: 380 SKK 382
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 449 KSQRLTLTPKTSQETPKIRHRQSHPK*DHRYHM 547
KS L TPK + P ++ H + D+RY++
Sbjct: 123 KSPLLQSTPKPNINNPDNENKSKHDEFDNRYNI 155
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 472 SENFTRNTKNQTS--PVTPKVRSPLSYEIAENILDRPSP 582
SE F K++ S P K + L E+A+NI+ PSP
Sbjct: 81 SEEFPSVVKDEQSIFPAVAKASNSLD-ELAQNIIPAPSP 118
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +2
Query: 350 SSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETP 496
S P NY T P + P S + M+N + +P + TP
Sbjct: 466 SFPQNYDSTVPAVYPYMPPPFSGSDMNVMSNPAADTLRSYSPASQVSTP 514
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +2
Query: 245 LAQHKKKMYPHSLSFDQSPGPSKRRILSDIQNSILS---SPINYKPTSPLIERLKSPETR 415
L Q+ + YP + S P+KR +S+ S S INY SP+ P+
Sbjct: 404 LNQNNVRNYPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMYYNYNYPQPS 463
Query: 416 NSPLKTMTN 442
P + N
Sbjct: 464 FPPFHPIYN 472
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 487 RNTKNQTSPVTPKVRSPLSYEIAENILDRPSPLTSRSL 600
++ ++ P+ P +RSPL + +EN S L++ +L
Sbjct: 737 QSLSSERIPLDPSMRSPLQQQSSENESKSQSMLSANNL 774
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 430 NHDKLTKIPEINSHSENFTRNTKNQTSPVTPKVRSPLSYEIAEN--ILDRPSPLTSRSLR 603
NH+ + + + NS +++ + + S V SP+S +++ + L PS + S LR
Sbjct: 94 NHNWSSDLQQANSPVASYSSQSVSNDSNFPKDVTSPISTDLSGSNPSLKSPSSINSAKLR 153
Query: 604 GT 609
+
Sbjct: 154 AS 155
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 326 SDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQE 490
+ +Q++ ++S P +PL + KS + + S L T+ + TPK S++
Sbjct: 509 ASLQSAGVASDGESSPETPLTKASKSKKAKASKLANDTSKNANGETKSTPKKSKK 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,662
Number of Sequences: 5004
Number of extensions: 56420
Number of successful extensions: 238
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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