Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021760
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 35 0.065
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 31 0.61
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 31 1.1
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 29 3.2
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 4.3
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 28 5.6
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939... 28 7.5
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 27 9.9
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 27 9.9
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 27 9.9
02_01_0232 + 1543597-1543800,1544189-1544377,1544695-1544859,154... 27 9.9
>08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 34.7 bits (76), Expect = 0.065
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +2
Query: 260 KKMYPHSLSFDQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMT 439
KK+YP S + D S PSK + + S P + K S L E+ K E + TMT
Sbjct: 811 KKLYPKSATPDSSSAPSKSSATASLTGS-FDRPKSVKDGSEL-EKPKQEEDAKEGINTMT 868
Query: 440 NSPKSQRLTLTPKTSQETPK 499
+ +S LT+ + P+
Sbjct: 869 SRVES--LTINEDVKENEPE 886
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 385 DRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFTRNTKNQTSPVTPKVRSPLSYEIAENI 564
D++ K +D++ +K HDKL + IN +N + + K+ T P+ P + + EN+
Sbjct: 501 DKEAKKEKDEQNNNKEHDKLRE-NSINYQVDN-SLHMKSSTPPLAPPADDAKAAQADENL 558
Query: 565 LDR 573
R
Sbjct: 559 KKR 561
>06_01_0747 -
5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 415 KLTSKNHDKLTKIPEINSHSENFTRNTKNQTSPVTPKVRSPLSYEIAENILDRP 576
+LT N DK T +S S + + T+ TSP T + +I + +DRP
Sbjct: 460 RLTRNNKDKFTSSMIASSCSSSLKQTTELATSPSTARSVESQETQITDMAVDRP 513
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 356 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQET 493
P+N +P +I++ P+ + S ++ P+S ++ +PK+SQ T
Sbjct: 267 PLNPRPREQVIQQNHEPQAQKSVRLQSSSGPESHKVQ-SPKSSQRT 311
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 504 LIFGVSCEVFGVRVNLWDFGEFVMVFRGEFLVSGDFNLSIRG 379
L+ ++ N DF + + + + E+L+ DF+L +RG
Sbjct: 1156 LLLRYGSQLMAASENQLDFPKIISLLKKEYLLKDDFSLKVRG 1197
>01_06_1097 + 34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/94 (22%), Positives = 44/94 (46%)
Frame = +1
Query: 253 TQKEDVPPLA*LRPKSWPLEAQDPLRHTKLYTQLTN*LQTYFTSDRKIKVTRDQKLTSKN 432
T K D+ L +PL++ D N + F S+ + D ++ +
Sbjct: 918 TNKVDMIDLKEETAAGYPLDSDDDADKIYPEPMEDNVIDESFLSE--LDAVGDFRVEATR 975
Query: 433 HDKLTKIPEINSHSENFTRNTKNQTSPVTPKVRS 534
D+ ++P+++SH +N T N ++S ++P++ S
Sbjct: 976 SDQ--QMPDVDSHIDNNTSNGVAESSLISPQISS 1007
>07_03_1760 -
29289997-29290377,29290539-29290755,29291152-29293953,
29294134-29294178,29294274-29294358,29294791-29294875,
29296429-29296530,29296747-29296851,29296940-29297029,
29297163-29297258
Length = 1335
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +3
Query: 156 NNCQCSGLITENFRINSGNNATKRKQEEAFSHNTKRRCTPTRLASTKVLAPRSAGSSQTY 335
N +C+ I E + NNA +A NT + T LA P SA + +
Sbjct: 790 NGAECTVFIPEEIPNSKANNAATNNSRDALQMNTALALSKTELAEKN---PGSASADEYR 846
Query: 336 KT 341
K+
Sbjct: 847 KS 848
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 186 ENFRINSGNNATKRKQEEAFSHNTKRRCTPTRLASTKVLAP 308
EN RIN GN + + K+ S N + P LA T+V +P
Sbjct: 513 ENVRINRGNGSIQPKKHTYISGNLHPQGDPRTLA-TRVRSP 552
>06_03_0038 -
15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 377 SPLIERLKSPETRNSPLKTMTNSPKSQRL-TLTPKTS-QETPKIRHRQSHP 523
SP E + N+P + TNSP Q +TP + TP+I + HP
Sbjct: 400 SPTSEEAQDHHIHNTPDISPTNSPPPQPCRIITPDAAFNPTPQITSTEPHP 450
>05_04_0077 - 17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2
Query: 308 SKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSP 448
S RR + ++Q S ++ + K +S + + ETR SP++++++SP
Sbjct: 992 SVRRNICNVQASTAATSSSSKVSSSHKNKPEFQETRTSPVESVSSSP 1038
>02_01_0232 +
1543597-1543800,1544189-1544377,1544695-1544859,
1545199-1545459,1546059-1546271,1546365-1546587,
1547974-1548149
Length = 476
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 507 CLIFGVSCE-VFGVRVNLWDFGEFVMVFRGEFLVSGDFNLSIRGEVGL*LIGELSIEFCM 331
CL +G+ E V R + + +F+ F EF + L E+GL + GEL C
Sbjct: 113 CLSWGIDKERVLRGRTGIEAYFDFMRSFHMEFRNLTEEGLISAIEIGLGVSGELKYPSCP 172
Query: 330 SERILRFEGPG 298
R+ G G
Sbjct: 173 ERMGWRYPGIG 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,226,381
Number of Sequences: 37544
Number of extensions: 327692
Number of successful extensions: 1017
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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