Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021760
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    28   0.091
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 239 SILAQHKKKMYPHSLSFDQSPGPSK--RRILSDIQNSILSSPINYKPTSPLIERLKSPET 412
           ++L+   + +Y HS+       PS   R +   I+N+I   P  Y+   PL+  + S E 
Sbjct: 450 ALLSYFIEPIYFHSIVLGSLLNPSHMYRAVCGRIENTIQGLPPPYRLNKPLMSLITSSEV 509

Query: 413 R 415
           R
Sbjct: 510 R 510


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 189 FLLLIRNTGNYFRNFHYSLPTFWHNVLIL 103
           F  L +   N ++ +  SLP + +N LIL
Sbjct: 434 FYQLYKKVMNLYQQYQQSLPVYQYNDLIL 462


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 240 LLPVYVLLRCYRNLS*SFLL 181
           L+PV+  LR YRN + ++L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 240 LLPVYVLLRCYRNLS*SFLL 181
           L+PV+  LR YRN + ++L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 240 LLPVYVLLRCYRNLS*SFLL 181
           L+PV+  LR YRN + ++L+
Sbjct: 210 LIPVHFALRIYRNGTVNYLM 229


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 240 LLPVYVLLRCYRNLS*SFLL 181
           L+PV+  LR YRN + ++L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 163 QLFSQFSLLSPHILAQRFNSNLKH 92
           QL+ Q  LL   +L   + SN+K+
Sbjct: 375 QLYGQLDLLVRKVLGFGYESNVKY 398


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = +2

Query: 179 NNRKLQDKFR*QRNKT*TGRSILAQHKKKMYPHSLSFDQSPGP 307
           NN  L + +    N      +    +KK  Y + ++ +Q P P
Sbjct: 84  NNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVP 126


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 163 QLFSQFSLLSPHILAQRFNSNLKH 92
           QL+ Q  LL   +L   + SN+K+
Sbjct: 375 QLYGQLDLLVRKVLGFGYESNVKY 398


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 163 QLFSQFSLLSPHILAQRFNSNLKH 92
           QL+ Q  LL   +L   + SN+K+
Sbjct: 1   QLYGQLDLLVRKVLGFGYESNVKY 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,863
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)