Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021759
         (780 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    46   3e-07
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    45   8e-07
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    36   3e-04
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    27   0.17 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   3.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   6.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.4  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 DWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 427
           +W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V +NGS  +
Sbjct: 59  EWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLY 118

Query: 428 IKRLDISTPISMQLDNWPNDMQTCTFK 508
           +      +   M +  +P D Q C  K
Sbjct: 119 VPPGIFKSTCKMDITWFPFDDQHCDMK 145


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 DWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 427
           +W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V +NGS  +
Sbjct: 59  EWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLY 118

Query: 428 IKRLDISTPISMQLDNWPNDMQTCTFK 508
           +      +   + +  +P D Q C  K
Sbjct: 119 VPPGIFKSTCKIDITWFPFDDQHCDMK 145


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +2

Query: 248 SNDWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSV 421
           S +W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS 
Sbjct: 57  SLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSC 116

Query: 422 SWIKRLDISTPISMQLDNWPNDMQTCTFK 508
            ++      +   M +  +P D Q C  K
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHCDMK 145


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +2

Query: 248 SNDWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSV 421
           S +W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS 
Sbjct: 57  SLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSC 116

Query: 422 SWIKRLDISTPISMQLDNWPNDMQTCTFK 508
            ++      +   M +  +P D Q C  K
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHCDMK 145


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 DWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 427
           +W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS  +
Sbjct: 59  EWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLY 118

Query: 428 IKRLDISTPISMQLDNWPNDMQTCTFK 508
           +      +   M +  +P D Q C  K
Sbjct: 119 VPPGIFKSTCKMDITWFPFDDQHCDMK 145


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
 Frame = +2

Query: 257 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSN 409
           W D RL++     G  T  V SE    +W PD   +N        ATT+ ++    RV +
Sbjct: 96  WTDPRLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHH 151

Query: 410 NGSVSWIKRLDISTPISMQLDNWPNDMQTC 499
           +GS++   RL I+    M L   P D Q C
Sbjct: 152 SGSITRSIRLTITASCPMNLQYLPMDRQLC 181


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 386 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKSVLGCTIVT 535
           A+   +  N + SW + ++  + + M LDNW ND        +  CTI++
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKNDKSLKRKFYLTICTIMS 321


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 690 RGASPERHLEHCHASFHLATVLAL 619
           +  +P   L HCH  FH+   +AL
Sbjct: 593 KATNPGYWLFHCHIEFHVEVGMAL 616


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/56 (21%), Positives = 22/56 (39%)
 Frame = +3

Query: 9   SCHKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVV 176
           +C  ++ T +    F  TC I    +CE  +     +D ++    R      KI +
Sbjct: 174 ACISIAYTNVSTDAFFYTCLIQIETQCEIVSDTLRNLDKIVTNGFRNVAESRKIFI 229


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 433 LYPG-DGAVIRYTGAESVVPGGGC 365
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 768  VAAARQPRRAEAGAPRRTRAGRQRVCRGASP 676
            + + RQP    AG+P R  A      R  +P
Sbjct: 916  LTSPRQPAETHAGSPCRNSASPASSDRSGTP 946


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 690 RGASPERHLEHCHASFHL 637
           R  +P   L HCH  FH+
Sbjct: 660 RADNPGYWLFHCHFLFHI 677


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 89   AFCRTSYSTSEEKR*QNNIS 30
            A C   YST EEK  Q N S
Sbjct: 1374 AVCDACYSTIEEKNLQVNES 1393


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,242
Number of Sequences: 336
Number of extensions: 4279
Number of successful extensions: 25
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)