Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021759
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.7  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    27   3.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   7.0  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 139 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 41
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 433  ALGH*HSNFYAVRQLAQRHADLHVQVGSRMHNSDEMDFVIDKRIYSMFESGAWDV 597
            A  H   + +   QL   HA L V  GS  ++  E  F +D  I    +   WDV
Sbjct: 2557 ATSHEQCHEWEKAQLVYEHAQLKVCTGSLPYSPTEHGFWLDHWILCAQKLNQWDV 2611


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 765 AAARQPRRAEAGAPRRTRAGRQRVCRGASPERHLEHCHASFHL 637
           A  +QP+R E  AP+ T+  +    + A P    E     FHL
Sbjct: 386 AQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAPSKEKSRKKFHL 428


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 21   MSTTYIILLPFLLTCAIASAAECENATSLS 110
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,768
Number of Sequences: 5004
Number of extensions: 68402
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)