Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021759
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1147 + 34892415-34893702,34894051-34894676 32 0.59
08_02_0292 - 15420378-15421229 31 1.0
06_01_1104 + 9097108-9097779 31 1.0
06_03_0757 + 24267599-24268882 30 1.8
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 29 3.1
09_02_0020 + 3042502-3042980,3043068-3043176,3043290-3043476,304... 29 3.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.1
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 29 3.1
09_04_0502 - 18163192-18163435,18164000-18164154,18164243-181644... 29 5.5
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 29 5.5
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 28 7.2
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.2
12_01_0242 + 1812891-1812897,1814073-1814830 28 9.6
11_01_0245 + 1884361-1884400,1884549-1885282 28 9.6
08_02_0813 + 21459776-21461128 28 9.6
07_01_0602 + 4485753-4486751 28 9.6
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 28 9.6
05_02_0124 + 6849034-6851502 28 9.6
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 28 9.6
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 28 9.6
02_05_0108 + 25903545-25904292,25904888-25904989,25905220-25905263 28 9.6
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662... 28 9.6
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 31.9 bits (69), Expect = 0.59
Identities = 33/110 (30%), Positives = 45/110 (40%)
Frame = +3
Query: 99 TSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMIGSTND*V 278
TS +D T+D E P + + LT L N L L+ + +N+
Sbjct: 139 TSTLTFLDLSYNTFDGEIPLRVQNLTQLTALLLQNNSLSGPIPDLQLPKLRHLNLSNN-- 196
Query: 279 GTQGNGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG 428
G +L P N+ G + C LQP PGT S P T+PSPG
Sbjct: 197 NLSGPIPPSLQRFPANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
>08_02_0292 - 15420378-15421229
Length = 283
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 777 GGLVAAARQPRRAEAGAPRRTRAGRQRVCRGASPER 670
GG A R RR G P R R G +R GA ER
Sbjct: 144 GGRSGAGRGSRRRRDGRPWRRRGGAEREAAGADDER 179
>06_01_1104 + 9097108-9097779
Length = 223
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 777 GGLVAAARQPRRAEAGAPRRTRAGRQRVCRGASPER 670
GG A R RR G P R R G +R GA ER
Sbjct: 84 GGRSGAGRGSRRRRDGRPWRRRGGAEREAAGADDER 119
>06_03_0757 + 24267599-24268882
Length = 427
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 239 GRSSNDWIDKRLSWN-AGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYA 388
G SS W+ SW AG W C + ++ WRP L A TA DY+
Sbjct: 337 GGSSTGWVANP-SWRPAGPWVCFNPWPAQQQAWRPSSAGLLGPAPTA-DYS 385
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 780 SGGLVAAARQPRRAEAGAPRRTRAGRQRVCRGASP-ERHLEHCHASF 643
SGG+ AA RR A AP G +RV ASP +R C A F
Sbjct: 24 SGGVEAAPPVKRRRVAVAPSAGAGGSRRVQAEASPLQRLFRACRAVF 70
>09_02_0020 +
3042502-3042980,3043068-3043176,3043290-3043476,
3043690-3043784
Length = 289
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -1
Query: 774 GLVAAARQPRR----AEAGAPRRTRAGRQRVCRGASPER 670
G VA AR+ RR A++GA RRTR+G Q C + R
Sbjct: 66 GEVAGARRGRRSGTGAQSGARRRTRSGAQCGCGAGAAAR 104
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 230 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 141
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 755 GSRGEQKQEHHGEHAPAASACAGARLRKDIWNIATRAS 642
G+R ++KQE +G P S+ + RKD +NI R S
Sbjct: 749 GARLQRKQEGYGSRPPPPSSEEERKGRKDTFNIKGRVS 786
>09_04_0502 -
18163192-18163435,18164000-18164154,18164243-18164447,
18164530-18164819,18164845-18164853,18164920-18165085,
18165170-18165258,18165365-18165432,18165843-18166164
Length = 515
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -2
Query: 722 GEHAPAASACAGARLRKDIWNIATRASTSPRSWLCTAL 609
G A AA+ A R +W A RAST+ WLC AL
Sbjct: 5 GVKAAAAAEKAREAARAKVW--AARASTTVVLWLCCAL 40
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 300 QPHSPAFQLSRLSIQSFEDLPVSARWTRT 214
QP S AF +R ++ + D+P ARW ++
Sbjct: 1094 QPASGAFAYTRYFLKKYRDVPSVARWEKS 1122
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Frame = +2
Query: 647 LAWQCSRCLSGD--------APRHTRWRP--ARVRRGAPASALRGCLAAAT 769
+A CSRC++ D A RH WRP A R S RG A AT
Sbjct: 142 VATTCSRCVAADATGCGSLGASRHRPWRPRAAAPRSALARSTFRGVRADAT 192
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 398 GRGERSPRRWLQPRLAVPRQASTSVPRTP 312
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>12_01_0242 + 1812891-1812897,1814073-1814830
Length = 254
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 242 RSSNDWIDKRLSWNAGEWGCSTW 310
RS+ DW K SWN CS W
Sbjct: 153 RSNMDWGTKHESWNEWSKNCSGW 175
>11_01_0245 + 1884361-1884400,1884549-1885282
Length = 257
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 242 RSSNDWIDKRLSWNAGEWGCSTW 310
RS+ DW K SWN CS W
Sbjct: 164 RSNMDWGTKHESWNEWSKNCSGW 186
>08_02_0813 + 21459776-21461128
Length = 450
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 287 GEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQ 466
G++ C WL + R P LL+ TT R V+ W K+ IS P+S++
Sbjct: 238 GDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSIE 289
Query: 467 L 469
L
Sbjct: 290 L 290
>07_01_0602 + 4485753-4486751
Length = 332
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = +2
Query: 665 RCLSGDAPRH-TRWRP 709
RCL+GD PRH RW P
Sbjct: 69 RCLTGDRPRHWLRWLP 84
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 737 KQEHHGEHAPAASACAGARLRKDIWNIATRASTSPRSWLCTALDRS 600
K++HH + A A G R+ K + R SW+C AL +S
Sbjct: 411 KKQHHQQCAIALKDKFGIRVTKSQVHRHLRLCKEKWSWICAALGKS 456
>05_02_0124 + 6849034-6851502
Length = 822
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 664 GTLPRELPPRHGPGSAPHWTDPSHPTLL 581
G LPR+ PP P S P+ T P +P L
Sbjct: 10 GKLPRQPPPPPPPPSPPNSTFPRYPKSL 37
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = +2
Query: 665 RCLSGDAPRH-TRWRP 709
RCL+GD PRH RW P
Sbjct: 313 RCLTGDRPRHWLRWLP 328
>03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 737 KQEHHGEHAPAASACAGARLRKDIWNIATRASTSPRSWLCTALDRS 600
K++HH + A A G R+ K + R SW+C AL +S
Sbjct: 933 KKQHHQQCAIALKDKFGIRVTKSQVHRHLRLCKEKWSWICVALGKS 978
>02_05_0108 + 25903545-25904292,25904888-25904989,25905220-25905263
Length = 297
Score = 27.9 bits (59), Expect = 9.6
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Frame = +3
Query: 81 AECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRES---ESTVRILADLQ 251
A C NA + SL +D YD + R+ S +L +LQ
Sbjct: 119 AVCANAYAASLQVDGCYVRYDAADFIGRADTTTAYRKCSSSTSRDGAFLSSRDGVLGELQ 178
Query: 252 MI-GSTND*VGTQGNGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYL 407
G GT A LG P N C +L+ GT L+A VYL
Sbjct: 179 AAAGYKLSTSGTVQGVAQCLGDVPANDCTACLAEAVGQLKGACGTALAADVYL 231
>02_03_0343 +
17961977-17962596,17962670-17963015,17965933-17966291,
17966384-17966636
Length = 525
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 768 VAAARQPRRAEAGAPRRTRAGRQRVCRGASPERH 667
+ +A + R+ R RA +R+CR AS +RH
Sbjct: 137 ILSAHRVRQFAGAHAREARATARRLCRAASRQRH 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,934,534
Number of Sequences: 37544
Number of extensions: 618469
Number of successful extensions: 2462
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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