Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021758
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    27   2.6  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   3.4  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   4.5  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    25   7.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.9  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 5   TVCENVGGRLLVRYDGCDEDLQQLWIFFSNPRLSSFGYVTNKGSPWQFKYPGKVN 169
           T+   + GRL  + D   +     W   SN  +++ G+  N+ S W  KYP   N
Sbjct: 319 TIHNTLTGRLQNKLDTGSQVCNMAWSKTSNEIVTTHGFAKNQVSLW--KYPSLKN 371


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -1

Query: 104 SAVG*RKISRAAVGPRRSRRTAPAACPRRSRT 9
           +A+  RK++ + +GPR+ R   P+  PRR+++
Sbjct: 61  TAMAVRKLNNSELGPRKIRVEFPSNDPRRNQS 92


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 611 FRGCLVPKQ*SGAGTDDVADRYSSQSKGP 525
           +R C + +  S A  D+  ++Y S+S GP
Sbjct: 31  WRNCTLQRHGSRASADEFCEQYRSRSHGP 59


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +2

Query: 317 DPQDMRTVRPATVSKVFNNFHFLVALDDHADDYEDANAAWLCDSMHPYI 463
           +P+D +T+R +T   +     F + + D+ D     +   +C+   P+I
Sbjct: 109 NPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICEKCWPFI 157


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 122  TNKGSPWQFKYPGKVNKFSC 181
            T+    W+FK+ GK + FSC
Sbjct: 3068 THTSIVWEFKHLGKTSYFSC 3087


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,020
Number of Sequences: 5004
Number of extensions: 49796
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)