Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021758
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 32 0.38
02_03_0411 - 18739279-18739902,18741471-18741671 32 0.50
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 30 2.0
06_03_1050 + 27211019-27211660 30 2.0
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 30 2.0
02_05_0600 - 30273080-30274692,30274709-30274949 29 3.5
01_01_1107 + 8756514-8756981 29 3.5
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 29 4.7
05_01_0347 - 2717275-2717613,2717994-2718077,2718185-2718247,271... 29 4.7
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 28 8.2
08_02_0826 - 21583507-21583555,21584000-21584679 28 8.2
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 28 8.2
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734... 28 8.2
02_02_0472 - 10725234-10726119,10726201-10726808 28 8.2
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -1
Query: 200 ERSVCSCTKTCSLSRGI*TATVSPYS*RSRSCSAVG*RKISRAAVGPRRSRR 45
++SVCS C L+ G + Y+ S C++ K+SRAA+ P RS+R
Sbjct: 555 DQSVCS---NCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKR 603
>02_03_0411 - 18739279-18739902,18741471-18741671
Length = 274
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 9 CARTSGAGCWCGTTAATRTYSSSGYFSLTH-G*AASATSRIRAHRGSSNTPG 161
C+R G G G AA T +SSGY S++ G +A + R+H S + G
Sbjct: 108 CSRARGRGGGGGAAAAASTTTSSGYTSVSSVGAVTAAAAAWRSHDSSGHGYG 159
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 146 TATVSPYS*RSRSCSA-VG*RKISRAAVGPRRSRRTAPA 33
TATV+ S RSRSC+A R ++ A VG +R +R A
Sbjct: 319 TATVASSSMRSRSCTAKAEPRDVAAAGVGGKRKQRGGAA 357
>06_03_1050 + 27211019-27211660
Length = 213
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 495 SPSRAQGVEGGPLRLGRVPVRHVIRAGPR--LLLRNQTASEGNRSEHEAGSGEPTEPRGD 668
SP+RA GVEG R+G+ P R RA R + L N T + R+ + +G P P G
Sbjct: 50 SPTRAPGVEGP--RVGK-PARRRSRASRRAPVTLLN-TDTTNFRAMVQQFTGIPAPPAGA 105
Query: 669 PRGPRGL 689
GP G+
Sbjct: 106 FAGPGGV 112
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 544 EYLSATSSVPAPDYCFGTKQPLKGIEVNM 630
EY + TS++PA DYC+G G+ ++
Sbjct: 545 EYPTTTSTLPASDYCYGAGASSLGLRYSL 573
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 3 PLCARTSGAGCWCGTTAATRTYSS--SGYFSLTHG*AASATSRIRAHRGSSNT 155
PLC R CW T++ T S +G + T G A+ R+R HR +++T
Sbjct: 143 PLCRR-----CWASTSSPTGLPSPQPTGVSAYTAGLYAAVVGRLRLHRPAAST 190
>01_01_1107 + 8756514-8756981
Length = 155
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/74 (32%), Positives = 28/74 (37%)
Frame = +3
Query: 477 GLKDTASPSRAQGVEGGPLRLGRVPVRHVIRAGPRLLLRNQTASEGNRSEHEAGSGEPTE 656
G + SP A G G LRL R + A R + R E +G G
Sbjct: 10 GARCNGSPVEAGGATGRRLRLAGKEDRWPMEAHAR----RRVGIGQRRCEVASGGGGRGG 65
Query: 657 PRGDPRGPRGLHRG 698
PRG PRG G G
Sbjct: 66 PRGGPRGGGGWSTG 79
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 343 SHRPHVLRVTGPLTSYLLRSYAP 275
SH PH++ + GP +SY++ + P
Sbjct: 597 SHMPHMMSIGGPYSSYVVATVGP 619
>05_01_0347 -
2717275-2717613,2717994-2718077,2718185-2718247,
2718350-2718488,2719118-2719219,2719324-2719424,
2719915-2719981,2720074-2720120,2720246-2720440,
2720523-2720569,2721242-2721339,2722219-2722337,
2722438-2722611
Length = 524
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 319 VTGPLTSYLLRSYAPPSSDLAREIRRRGFLDGLLGAL 209
V G T LL PP D+A ++ + +D LLG+L
Sbjct: 413 VFGFFTKPLLNLLIPPRPDIAADLSSQSIIDPLLGSL 449
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 74 LWIFFSNPRLSSFGYVTNKGSPWQFKYPGKVNKF--SCKNKLSAQLRQSAEEAIKEPTPP 247
+W ++P FG T P F Y V+ SC ++LR+ A + ++P P
Sbjct: 7 IWWAHTSPDFVQFGVATLTCGP-HFYYGPHVSDTTASCTRVRRSRLREFARDRFRDPFNP 65
Query: 248 DL 253
DL
Sbjct: 66 DL 67
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 21 SGAGCWCGTTAATRTYSSSGYFSLTHG*AASATSRIRAHRGSSNTPG 161
SG+G G+ + + + SSSG S + G +SA S + GS+ PG
Sbjct: 93 SGSGSGSGSGSGSWSGSSSGSSSRSGGGGSSAGSSAESGAGSNAGPG 139
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 612 GNRSEHEAGSGEPTEPRGDPRGPRGLHRG 698
G+R G GE EPRG RG G RG
Sbjct: 2 GSRRPRLPGFGEDCEPRGGGRGGGGRGRG 30
>04_04_0371 +
24771687-24772081,24772139-24772535,24773394-24773435,
24773571-24774305,24775357-24775480,24775613-24776580,
24776917-24776925
Length = 889
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 97 TAEQLRLRHE*GLTVAVQIPRESEQVFVQEQTERSAPTERRGGHQGTHAA*SLVPNQSL 273
T+E + L GL AV+ P + V E + + G G H S+VP +SL
Sbjct: 77 TSEDMPLDAYSGLGEAVEEPSQIMSVNPTEAEKTGKSSGELGSDDGAHQGSSMVPRESL 135
>02_02_0472 - 10725234-10726119,10726201-10726808
Length = 497
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = -2
Query: 493 AVSLSPAYRVDVG---VHGVAQPXXXXXXXXXXXXVQSDEEMEVVEHLGDGGRSHRP 332
A+ SP+ RV G VHG P Q + EV GDG +RP
Sbjct: 255 ALVRSPSGRVGAGAGLVHGCVLPRILPRRSGKKKKKQKGNDQEVTSATGDGNGKNRP 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,544,558
Number of Sequences: 37544
Number of extensions: 409922
Number of successful extensions: 1366
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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